Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1388
         (530 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar...    26   3.0  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   3.0  
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe...    26   4.0  
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe...    26   4.0  
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe...    26   4.0  
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe...    26   4.0  

>SPAC1093.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -3

Query: 159 DGKNCIKTKKYIVISCFEVTVSXFRINCTSGSLV 58
           DGK  + TK Y ++  F  T   +   CT   +V
Sbjct: 75  DGKLILVTKAYAILGLFRFTAGYYLYLCTERKVV 108


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -3

Query: 504 HLLVGRVKREIQLISTKLS 448
           HLLV R+K+E+ L+ T+ +
Sbjct: 596 HLLVNRIKQELDLLKTRFT 614


>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 106 FKTAYNYIFFCFYAIFSVIN 165
           F  ++ Y FF F+A+FSVIN
Sbjct: 281 FLISFGY-FFTFFAVFSVIN 299


>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 106 FKTAYNYIFFCFYAIFSVIN 165
           F  ++ Y FF F+A+FSVIN
Sbjct: 281 FLISFGY-FFTFFAVFSVIN 299


>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 106 FKTAYNYIFFCFYAIFSVIN 165
           F  ++ Y FF F+A+FSVIN
Sbjct: 281 FLISFGY-FFTFFAVFSVIN 299


>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 106 FKTAYNYIFFCFYAIFSVIN 165
           F  ++ Y FF F+A+FSVIN
Sbjct: 281 FLISFGY-FFTFFAVFSVIN 299


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,770,891
Number of Sequences: 5004
Number of extensions: 31411
Number of successful extensions: 51
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)