Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1386
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ...    26   5.4  
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ...    25   9.5  

>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 581

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -2

Query: 304 FNLYLFDKFCLVVVTYSIENQNLIFFCVRHSFVYLV*CFLVISFISY 164
           F+ +LF  FC +   Y + +   I   +   F+YL+  F+ I F ++
Sbjct: 405 FSFWLFSIFCTIAAYYLVSSSTKITVFI---FLYLMLTFIGIIFSTF 448


>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
           subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 668

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -2

Query: 421 IQPNRSIPH*C*IARTCLSRRYHDY 347
           + P  ++P  C   R C+S+ YH++
Sbjct: 26  VWPLVTVPRQCICLRWCISKEYHEF 50


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,499,882
Number of Sequences: 5004
Number of extensions: 51017
Number of successful extensions: 125
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)