Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1386
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99281-52|CAB16507.3|  512|Caenorhabditis elegans Hypothetical p...    31   0.54 
Z70038-8|CAA93887.2|  618|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z68319-6|CAA92704.2|  618|Caenorhabditis elegans Hypothetical pr...    28   6.6  
AY220985-1|AAO65265.1|  618|Caenorhabditis elegans putative RNA ...    28   6.6  
AF068721-4|AAC19260.1|  298|Caenorhabditis elegans Hypothetical ...    28   6.6  
AC024844-6|AAK29956.1|  442|Caenorhabditis elegans Hypothetical ...    27   8.7  

>Z99281-52|CAB16507.3|  512|Caenorhabditis elegans Hypothetical
           protein Y57G11C.5 protein.
          Length = 512

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = +2

Query: 374 RPSYLTLMRYGTVGLDYVFTRKERASGLSRGSISHNSR 487
           RPS LT   YG+ GL+  +  K R +GL+R + +++ +
Sbjct: 160 RPSLLTTNGYGSAGLNATWIGKTRKAGLNRFACTYHKK 197


>Z70038-8|CAA93887.2|  618|Caenorhabditis elegans Hypothetical
           protein ZK1067.6 protein.
          Length = 618

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -3

Query: 525 LPGQQRQQPSPNSLELCEMLPRERPEARSFLVNT*SNPTVP 403
           L GQQ Q P P  L     LP + P+ + F  +  S P  P
Sbjct: 481 LVGQQHQVPPPAPLGFMGQLPPQAPQPQQFWSSYPSPPISP 521


>Z68319-6|CAA92704.2|  618|Caenorhabditis elegans Hypothetical
           protein ZK1067.6 protein.
          Length = 618

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -3

Query: 525 LPGQQRQQPSPNSLELCEMLPRERPEARSFLVNT*SNPTVP 403
           L GQQ Q P P  L     LP + P+ + F  +  S P  P
Sbjct: 481 LVGQQHQVPPPAPLGFMGQLPPQAPQPQQFWSSYPSPPISP 521


>AY220985-1|AAO65265.1|  618|Caenorhabditis elegans putative RNA
           binding protein SYM-2 protein.
          Length = 618

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -3

Query: 525 LPGQQRQQPSPNSLELCEMLPRERPEARSFLVNT*SNPTVP 403
           L GQQ Q P P  L     LP + P+ + F  +  S P  P
Sbjct: 481 LVGQQHQVPPPAPLGFMGQLPPQAPQPQQFWSSYPSPPISP 521


>AF068721-4|AAC19260.1|  298|Caenorhabditis elegans Hypothetical
           protein ZK1055.2 protein.
          Length = 298

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
 Frame = +3

Query: 3   FFFFFSSTIALYCCTKNIKFAKKVN---GCSHLSILFTRY 113
           F+ +FS T+  YC   N +F   V+    C+H    F R+
Sbjct: 3   FYCYFSETVRCYCKIHNYEFVLAVDTDFKCAHKDKFFRRH 42


>AC024844-6|AAK29956.1|  442|Caenorhabditis elegans Hypothetical
           protein Y65B4A.1 protein.
          Length = 442

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = +1

Query: 226 RRKLNFGSRSNMLQQLNKIYRTDID*S*NNNTIQDCNILRYNHDIV*INTSELFNTN 396
           RRKL    +   ++Q NKI+    D   N     DC ++  N     + T E+ N N
Sbjct: 276 RRKLTAAQKKRYMEQQNKIFEWTPDKPRNYRPKSDCTVIVKN-----LFTQEMMNKN 327


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,564,782
Number of Sequences: 27780
Number of extensions: 282232
Number of successful extensions: 759
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)