Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1385
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr...    29   0.48 
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   1.5  
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    27   2.0  
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce...    27   2.6  
SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe...    27   2.6  
SPBC1711.13 |his2||histidinol dehydrogenase His2 |Schizosaccharo...    26   4.5  
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi...    26   4.5  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    26   4.5  
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy...    26   4.5  
SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|ch...    26   6.0  
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    25   7.9  
SPBC3H7.01 |spo14|stl1, SPBP16F5.01c|WD repeat protein Spo14|Sch...    25   7.9  
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual      25   7.9  

>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 593

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 7/67 (10%)
 Frame = -1

Query: 373 LDNKLQVVALIDDDMCINCGKCYMACADS------GYQAIEFDSDTHLPHVTDD-CTGCT 215
           +   L  +A++ +D C    KC   C  S      G   IE +    +  +++  C GC 
Sbjct: 1   MSESLTRIAIVSEDKC-RPKKCRQECRRSCPVVRTGKLCIEVNPTDRIAFISETLCIGCG 59

Query: 214 LCLSVCP 194
           +C+  CP
Sbjct: 60  ICVKKCP 66


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -3

Query: 641 NSPPTFKHQKGKPGTNNS*RKWKGTDT 561
           N P  F+     P TNN  R W G+ T
Sbjct: 292 NQPSNFRSPNRAPSTNNRYRGWNGSPT 318


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1516

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 17/45 (37%), Positives = 19/45 (42%)
 Frame = +2

Query: 230  IISHMWKMGVRIEFYRLVPRVCTRHVAFSAIDTHIIINERDDLEF 364
            IIS MWK  +  E   LV R C  H            NER D+ F
Sbjct: 1145 IISQMWKSNLCQESVALVERYCV-HTLEYVFQKTSSANERPDIGF 1188


>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 576

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -2

Query: 261 LTPIFHM*LMIALVVLYVCLCAQLSTVYQWSRRKFLTSSK 142
           +T IFH+ L ++L+ + V LC  ++    W+    L+  K
Sbjct: 161 ITTIFHISLTVSLLTMTVFLCGYIAGPIVWAPLSELSGRK 200


>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 580

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -1

Query: 652 MDGTIRHLLLSTRKENPVQTIRDENGKVLTHFGIYNKKREQILHQNR 512
           M+  + +L L  + E P + I  E+GK L+   +   ++E+   Q R
Sbjct: 4   MEKQVENLSLEAKNEKPKEVILGEDGKPLSKKALKKLEKEREKEQKR 50


>SPBC1711.13 |his2||histidinol dehydrogenase His2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 439

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -1

Query: 448 YGLSAVPRISDVLGQALPKVGAYK-HLDNKLQVVALID 338
           YG+S VP+++ + G     V A K H+ N    +  ID
Sbjct: 201 YGISGVPKVNKIFGPGNQFVTAAKMHVQNDYGALVAID 238


>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 306

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = +3

Query: 135 KPLLMT*GIFFGTIDIQSIIGHTDKHRVQPVQSSVTCGRWVSESNSIAWYPE 290
           K  ++T  +  G+  I SI+ H++ +  Q   SS+T  R + + N + + PE
Sbjct: 200 KKKVLTLLLLLGSRLIASILQHSNSYFDQHTISSITDERDLEDKNKLPFIPE 251


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
            Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +1

Query: 478  QHSRRPVNLILIYFDGESVRVFCCKYRSVSVP 573
            +HS RPV L  IY DG   R +C +  S++ P
Sbjct: 1321 RHSVRPVPLE-IYIDGFPGRAYCPRMMSMNKP 1351


>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 648

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
 Frame = -1

Query: 445 GLSAVPRISDVLGQA-LPKVGAYKHLDNKLQVVALIDDDMCINCGKCYMACADSGYQAIE 269
           G+  + RI+  L +  +P    +  LD K ++ +L   +   N  K  + C D   + I+
Sbjct: 398 GIEDIKRITPFLNELKVPSYPLHAQLDQKKRLQSL---EKFKNNPKGVLVCTDVAARGID 454

Query: 268 FDSDTHLPH 242
             S TH+ H
Sbjct: 455 IPSVTHVIH 463


>SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 544 CCKYRSVSVPFHFRHELFVPGFPFWCLKVGG 636
           CCK   + +  H  H L +PGFP W + + G
Sbjct: 28  CCK---MGILQHLMHILDIPGFP-WKIVIAG 54


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 266 EFYRLVPRVCTRHVAFSAIDTHIIIN 343
           + YRL+ RV T H    A+ T  I++
Sbjct: 92  DLYRLIKRVLTNHPDLEAVSTGAILS 117


>SPBC3H7.01 |spo14|stl1, SPBP16F5.01c|WD repeat protein
           Spo14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -1

Query: 580 NGKVLTHFGIYNKKREQILHQNRLKLGLLDDD 485
           +GK++ H  +Y +K +    +N L+L   D+D
Sbjct: 91  DGKLIDHLRLYGRKDKLFEEKNALRLTDFDND 122


>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = -1

Query: 541 KREQILHQNRLKLGLLDDDCVVDNRSTNGSTYGLSAVPRISDVL-GQALPKVGAYKHLDN 365
           KR   + QNR++  L DD+    N S+   T   SA     D L  + LP++ +  + D+
Sbjct: 71  KRNPTIKQNRVRFDLPDDELSRSNVSSPEKTLLTSASTSTFDSLKKELLPELPSLAYSDD 130


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,913,577
Number of Sequences: 5004
Number of extensions: 65958
Number of successful extensions: 197
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)