Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1385
(700 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0464 - 10552347-10552466,10552683-10552928,10553866-105541... 37 0.018
11_06_0031 + 19425011-19425113,19425552-19425637,19425732-194258... 32 0.38
04_04_0319 + 24355275-24355401,24355504-24355603,24356271-243566... 31 0.67
08_02_0443 - 17207513-17207665,17207674-17207762,17207923-17208319 30 2.0
08_02_1149 + 24706429-24708105 29 2.7
05_01_0418 - 3288844-3288990,3289256-3289332,3289578-3289653,329... 29 2.7
04_04_0706 + 27419215-27419371,27419521-27419734,27419818-274199... 29 3.5
02_03_0176 + 16010806-16011095,16011983-16012061,16012389-160124... 29 3.5
06_01_0768 + 5742938-5743196,5743291-5744729 28 6.2
>02_02_0464 -
10552347-10552466,10552683-10552928,10553866-10554135,
10554231-10554413,10554493-10554688,10554775-10555079,
10555515-10555604,10555689-10555806,10555991-10556088,
10556187-10556272,10557622-10557736
Length = 608
Score = 36.7 bits (81), Expect = 0.018
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 6/67 (8%)
Frame = -1
Query: 352 VALIDDDMC--INCGK-CYMACA--DSGYQAIEFDSDTHLPHVTDD-CTGCTLCLSVCPI 191
+A++ +D C CG+ C C +G Q IE + + ++++ C GC +C+ VCP
Sbjct: 12 IAVVTEDRCRPSKCGQQCRKRCPVNATGRQCIEVTPSSRVSLISEELCIGCGICVKVCP- 70
Query: 190 IDCISMV 170
D I ++
Sbjct: 71 FDAIQII 77
Score = 33.1 bits (72), Expect = 0.22
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -1
Query: 352 VALIDDDMCINCGKCYMACADSGYQAIEFDSD 257
V+LI +++CI CG C C Q I SD
Sbjct: 51 VSLISEELCIGCGICVKVCPFDAIQIINLPSD 82
>11_06_0031 +
19425011-19425113,19425552-19425637,19425732-19425829,
19425950-19426067,19426200-19426289,19426770-19427074,
19427162-19427357,19427435-19427617,19427713-19427982,
19428906-19429151,19429633-19429704,19430087-19430104
Length = 594
Score = 32.3 bits (70), Expect = 0.38
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Frame = -1
Query: 364 KLQVVALIDDDMCINCGKCYMACADS------GYQAIEFDSDTHLPHVTDD-CTGCTLCL 206
+L +A++ +D C KC C S G IE + L ++++ C GC +C+
Sbjct: 4 RLTRIAIVSEDKC-KPKKCRQECKKSCPVVKTGKLCIEVTPASKLAFISEELCIGCGICV 62
Query: 205 SVCPIIDCISMV 170
CP D I ++
Sbjct: 63 KKCP-FDAIEII 73
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/32 (31%), Positives = 15/32 (46%)
Frame = -1
Query: 352 VALIDDDMCINCGKCYMACADSGYQAIEFDSD 257
+A I +++CI CG C C + I D
Sbjct: 47 LAFISEELCIGCGICVKKCPFDAIEIINLPKD 78
>04_04_0319 +
24355275-24355401,24355504-24355603,24356271-24356618,
24356705-24356745,24356821-24356867,24358043-24358107,
24358186-24358308,24358397-24358534,24358658-24358899,
24358988-24359118,24359363-24359388,24359746-24359882,
24359964-24360376,24360514-24360550,24360643-24360667,
24360755-24360887,24361241-24361340,24362015-24362115,
24362998-24363084
Length = 806
Score = 31.5 bits (68), Expect = 0.67
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Frame = -1
Query: 622 STRKENPVQTI-RDENGKVLTHFGIYNKKREQILHQ--NRLKLGLLDDDCVVDNRSTNGS 452
STR + P + + RDENG H + K QI + D +C S NGS
Sbjct: 304 STRGKKPQRELNRDENGNSACHIPLSGSKEVQIPENIVENVTFPSRDANCPTIEESENGS 363
Query: 451 TYGLSAVP 428
+G + P
Sbjct: 364 LHGTNTNP 371
>08_02_0443 - 17207513-17207665,17207674-17207762,17207923-17208319
Length = 212
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/66 (27%), Positives = 31/66 (46%)
Frame = -1
Query: 622 STRKENPVQTIRDENGKVLTHFGIYNKKREQILHQNRLKLGLLDDDCVVDNRSTNGSTYG 443
ST +EN V +++ +VLT+F Y K LKL L +C + +G+
Sbjct: 97 STTEENLVDIFKEQEKRVLTNFRDYLCKLATCGKLQELKLSLASTNCSEQAFADHGNNSS 156
Query: 442 LSAVPR 425
++ V +
Sbjct: 157 ITRVAK 162
>08_02_1149 + 24706429-24708105
Length = 558
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = -1
Query: 475 DNRSTNG-STYGLSAVPRISDVLGQALPKVGAYKHL 371
D TNG T+GL IS+VL G YKHL
Sbjct: 440 DCHQTNGYMTHGLKTAESISEVLTLGTDTAGPYKHL 475
>05_01_0418 -
3288844-3288990,3289256-3289332,3289578-3289653,
3290125-3290220,3290307-3290376,3290474-3290564,
3290753-3290822,3290908-3291044,3291313-3291465,
3291816-3291864,3292205-3292366
Length = 375
Score = 29.5 bits (63), Expect = 2.7
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -1
Query: 241 VTDDCTGCTLCLSVCP 194
+T+ C GC CLSVCP
Sbjct: 171 ITERCYGCGRCLSVCP 186
>04_04_0706 +
27419215-27419371,27419521-27419734,27419818-27419913,
27420006-27420123,27420211-27420384,27420633-27420803,
27420932-27420987,27421125-27421214,27421296-27421444,
27421640-27421722,27421830-27421958,27422063-27422137,
27422248-27422416,27422965-27423104,27423191-27423298,
27423603-27423783,27424445-27424542,27424639-27424728,
27424881-27425034,27425376-27425431,27425483-27425533,
27425651-27425732,27425821-27425995,27426748-27426823,
27426951-27427121,27427198-27427269,27427350-27427454,
27427948-27428037,27428703-27428908,27428989-27429190,
27429294-27429473,27429858-27429925,27430005-27430341,
27430428-27430637,27430765-27431448,27431537-27431940,
27432495-27432542,27432777-27433023,27433381-27433602,
27433796-27434026
Length = 2122
Score = 29.1 bits (62), Expect = 3.5
Identities = 9/36 (25%), Positives = 20/36 (55%)
Frame = -1
Query: 214 LCLSVCPIIDCISMVPKKIPHVIKRGLGYEIHPISP 107
+C I++C+ +PK +++R LG+ ++P
Sbjct: 209 VCFCTAVIVECLGAIPKLDTDIVQRVLGFVFDSLNP 244
>02_03_0176 +
16010806-16011095,16011983-16012061,16012389-16012464,
16012541-16012630,16012878-16013031,16013172-16013181,
16013240-16013407,16014087-16014485,16014580-16014990
Length = 558
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +3
Query: 345 SATTWSLLSRCLYAPTLGRA*PNTSLILGTALRPYVLPLVERLSTTQSSSSKPN 506
S +T ++L C P + A P+ ++ +RP ++LSTT + KPN
Sbjct: 326 SKSTKAVLYNCTEEPAVPTAVPHVAIDSAEGIRPRRRRRRKKLSTTDPNHPKPN 379
>06_01_0768 + 5742938-5743196,5743291-5744729
Length = 565
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/44 (31%), Positives = 18/44 (40%)
Frame = -1
Query: 286 GYQAIEFDSDTHLPHVTDDCTGCTLCLSVCPIIDCISMVPKKIP 155
G Q FD DT H+ D T CT + P + + P P
Sbjct: 362 GIQVRVFDGDTPFKHILDQITACTSQERLLP--EVVEQEPSSFP 403
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,497,298
Number of Sequences: 37544
Number of extensions: 411803
Number of successful extensions: 1031
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1031
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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