Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1385
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    25   0.52 
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    24   1.6  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   2.8  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   4.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   4.9  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   4.9  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -3

Query: 611 GKPGTNNS*RKWKGTDTLRYLQQ 543
           GKPG  ++ +  KGT+ L+YL++
Sbjct: 495 GKPGLCDAMKPTKGTELLKYLRK 517


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 520 DGESVRVFCCK 552
           DGE+ + FCCK
Sbjct: 450 DGETTKTFCCK 460


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -2

Query: 501 VYWTTTVLLTIVRPMAVHTALAQYQESATY 412
           V+  T V+L +VR   +HTA   +  S  +
Sbjct: 60  VFGNTLVILAVVRERYLHTATNYFVTSLAF 89


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/20 (45%), Positives = 12/20 (60%), Gaps = 2/20 (10%)
 Frame = -3

Query: 230 LHWL--YSMFVCVPNYRLYI 177
           L WL   S  +C+P Y +YI
Sbjct: 531 LGWLCGLSSMLCIPGYMIYI 550


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/20 (45%), Positives = 12/20 (60%), Gaps = 2/20 (10%)
 Frame = -3

Query: 230 LHWL--YSMFVCVPNYRLYI 177
           L WL   S  +C+P Y +YI
Sbjct: 584 LGWLCGLSSMLCIPGYMIYI 603


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +1

Query: 223 QCNHQSHVEDGCQNRILSLGTQ 288
           +CN + + +  C NR++  GT+
Sbjct: 473 ECNKRCNCDIDCINRVVQRGTK 494


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,490
Number of Sequences: 438
Number of extensions: 4175
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)