Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1382
         (393 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19F5.01c |puc1|SPBP8B7.32c|cyclin Puc1|Schizosaccharomyces p...    28   0.59 
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    25   3.2  
SPCC645.11c |mug117||meiotically upregulated gene Mug117|Schizos...    24   7.3  
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    24   9.7  

>SPBC19F5.01c |puc1|SPBP8B7.32c|cyclin Puc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 359

 Score = 27.9 bits (59), Expect = 0.59
 Identities = 17/44 (38%), Positives = 26/44 (59%)
 Frame = +3

Query: 30  VLTIYLRN*QLFGRYSYRPAQGGCLRELHNGRIISFIDDLYIEV 161
           +L ++L N Q   R+S RPA    + E+HNG  +S ID L + +
Sbjct: 112 LLNVHLSNQQPELRWSMRPALVNFIVEIHNGFDLS-IDTLPLSI 154


>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 9/12 (75%), Positives = 12/12 (100%)
 Frame = +2

Query: 29  GFDHLFKELTIV 64
           G+DHLFK++TIV
Sbjct: 295 GYDHLFKKVTIV 306


>SPCC645.11c |mug117||meiotically upregulated gene
           Mug117|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 186

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -2

Query: 188 STRCLVKRNYFYIEVVDERNYPSVVEFSEAPTLSW 84
           +TRC VK NY Y +  +     S  ++ E P   W
Sbjct: 153 NTRCYVKLNYCYPDCTEITPSTSEYDYRE-PVRDW 186


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1057

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = -2

Query: 143 VDERNYPSVVEFSEAPTLSWSVRISTKQLL 54
           V+ R  PS++ + +  ++ W  +++  QLL
Sbjct: 133 VETRLIPSLISYLDDSSIKWPSKVAALQLL 162


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,110,306
Number of Sequences: 5004
Number of extensions: 16102
Number of successful extensions: 39
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)