Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1381
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce...    27   2.0  
SPAC631.01c |acp2||F-actin capping protein beta subunit |Schizos...    27   2.6  

>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -3

Query: 155 PL*DISPKV*TVGSGLALPLALLKSMGDGNHSPSGGP 45
           P   +SPK  T      LP A + ++GDG+  P   P
Sbjct: 427 PTPQVSPKRPTYSRSSPLPSASVPALGDGSPDPPAAP 463


>SPAC631.01c |acp2||F-actin capping protein beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 268

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 568 RNAIGCGQMNLSHHFQHETSCRIPAAPGD 654
           ++A+    +NLS H   +TS R+PAA  D
Sbjct: 179 QSALPSKALNLSGHLTRQTSQRLPAADDD 207


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,852,508
Number of Sequences: 5004
Number of extensions: 55928
Number of successful extensions: 113
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)