Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1381
(700 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Y08637-1|CAA69927.1| 487|Caenorhabditis elegans nicotinic acety... 29 4.2
U23525-2|AAK71378.1| 487|Caenorhabditis elegans Acetylcholine r... 29 4.2
Z92811-3|CAB07274.1| 1083|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z92789-9|CAB07223.1| 1083|Caenorhabditis elegans Hypothetical pr... 28 7.4
AF067945-11|AAV28330.1| 1604|Caenorhabditis elegans Mechanosenso... 28 7.4
AF067945-10|AAV28329.1| 1818|Caenorhabditis elegans Mechanosenso... 28 7.4
AF067945-9|AAV28328.1| 1954|Caenorhabditis elegans Mechanosensor... 28 7.4
AF067945-7|ABQ13059.1| 954|Caenorhabditis elegans Mechanosensor... 28 7.4
AF067945-6|AAV28326.1| 1167|Caenorhabditis elegans Mechanosensor... 28 7.4
AF067945-5|AAV28325.1| 1685|Caenorhabditis elegans Mechanosensor... 28 7.4
AF067945-4|AAV28327.1| 1995|Caenorhabditis elegans Mechanosensor... 28 7.4
AF067945-3|AAV28331.1| 2006|Caenorhabditis elegans Mechanosensor... 28 7.4
AF067945-2|AAV28324.1| 2007|Caenorhabditis elegans Mechanosensor... 28 7.4
Z68009-2|CAA92004.2| 891|Caenorhabditis elegans Hypothetical pr... 27 9.8
>Y08637-1|CAA69927.1| 487|Caenorhabditis elegans nicotinic
acetylcholine receptorsubunit ACR-3 protein.
Length = 487
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 49 PPDGEWLPSPMDFSNARGRAKPLPTVYTFGLISHSG 156
PPD WLP + F+NA G L + Y+ ++ H+G
Sbjct: 104 PPDKVWLPDIVLFNNADGNY--LVSFYSNVVVEHTG 137
>U23525-2|AAK71378.1| 487|Caenorhabditis elegans Acetylcholine
receptor protein 3 protein.
Length = 487
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 49 PPDGEWLPSPMDFSNARGRAKPLPTVYTFGLISHSG 156
PPD WLP + F+NA G L + Y+ ++ H+G
Sbjct: 104 PPDKVWLPDIVLFNNADGNY--LVSFYSNVVVEHTG 137
>Z92811-3|CAB07274.1| 1083|Caenorhabditis elegans Hypothetical
protein T01G1.3 protein.
Length = 1083
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = +1
Query: 31 GRRAYGPPDGEWLPSPMDFSNARGRAK--PLPTVYTF 135
G Y P + P PMD+SN R + P+P TF
Sbjct: 810 GFNPYNPSHSQCPPPPMDYSNNRRNSNLTPMPPSSTF 846
>Z92789-9|CAB07223.1| 1083|Caenorhabditis elegans Hypothetical
protein T01G1.3 protein.
Length = 1083
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = +1
Query: 31 GRRAYGPPDGEWLPSPMDFSNARGRAK--PLPTVYTF 135
G Y P + P PMD+SN R + P+P TF
Sbjct: 810 GFNPYNPSHSQCPPPPMDYSNNRRNSNLTPMPPSSTF 846
>AF067945-11|AAV28330.1| 1604|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform g protein.
Length = 1604
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Frame = +3
Query: 549 YIGASFKECYWMWSDES--QSSFSARNLVPN 635
Y A FKEC W D S FS +NL N
Sbjct: 234 YWNAQFKECEAFWYDSSCGDQDFSKKNLFKN 264
>AF067945-10|AAV28329.1| 1818|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform f protein.
Length = 1818
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Frame = +3
Query: 549 YIGASFKECYWMWSDES--QSSFSARNLVPN 635
Y A FKEC W D S FS +NL N
Sbjct: 448 YWNAQFKECEAFWYDSSCGDQDFSKKNLFKN 478
>AF067945-9|AAV28328.1| 1954|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform e protein.
Length = 1954
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Frame = +3
Query: 549 YIGASFKECYWMWSDES--QSSFSARNLVPN 635
Y A FKEC W D S FS +NL N
Sbjct: 584 YWNAQFKECEAFWYDSSCGDQDFSKKNLFKN 614
>AF067945-7|ABQ13059.1| 954|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform i protein.
Length = 954
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Frame = +3
Query: 549 YIGASFKECYWMWSDES--QSSFSARNLVPN 635
Y A FKEC W D S FS +NL N
Sbjct: 633 YWNAQFKECEAFWYDSSCGDQDFSKKNLFKN 663
>AF067945-6|AAV28326.1| 1167|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform c protein.
Length = 1167
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Frame = +3
Query: 549 YIGASFKECYWMWSDES--QSSFSARNLVPN 635
Y A FKEC W D S FS +NL N
Sbjct: 633 YWNAQFKECEAFWYDSSCGDQDFSKKNLFKN 663
>AF067945-5|AAV28325.1| 1685|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform b protein.
Length = 1685
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Frame = +3
Query: 549 YIGASFKECYWMWSDES--QSSFSARNLVPN 635
Y A FKEC W D S FS +NL N
Sbjct: 633 YWNAQFKECEAFWYDSSCGDQDFSKKNLFKN 663
>AF067945-4|AAV28327.1| 1995|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform d protein.
Length = 1995
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Frame = +3
Query: 549 YIGASFKECYWMWSDES--QSSFSARNLVPN 635
Y A FKEC W D S FS +NL N
Sbjct: 625 YWNAQFKECEAFWYDSSCGDQDFSKKNLFKN 655
>AF067945-3|AAV28331.1| 2006|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform h protein.
Length = 2006
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Frame = +3
Query: 549 YIGASFKECYWMWSDES--QSSFSARNLVPN 635
Y A FKEC W D S FS +NL N
Sbjct: 637 YWNAQFKECEAFWYDSSCGDQDFSKKNLFKN 667
>AF067945-2|AAV28324.1| 2007|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform a protein.
Length = 2007
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Frame = +3
Query: 549 YIGASFKECYWMWSDES--QSSFSARNLVPN 635
Y A FKEC W D S FS +NL N
Sbjct: 637 YWNAQFKECEAFWYDSSCGDQDFSKKNLFKN 667
>Z68009-2|CAA92004.2| 891|Caenorhabditis elegans Hypothetical
protein R09A8.2 protein.
Length = 891
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +1
Query: 49 PPDGEWLPSPMDFSNARGRAKPLPTVYTFGLISHSGIYILD 171
PP + +PS + FSNA L T G S SG IL+
Sbjct: 847 PPKKKRVPSSISFSNAEKTRMVLTTTSNIGSGSSSGEEILE 887
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,005,473
Number of Sequences: 27780
Number of extensions: 324364
Number of successful extensions: 693
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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