Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1380
(714 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom... 31 0.16
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|... 28 1.2
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit... 27 3.5
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c... 26 4.7
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom... 26 4.7
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm... 26 6.1
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 26 6.1
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 25 8.1
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 25 8.1
>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 781
Score = 31.1 bits (67), Expect = 0.16
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +1
Query: 244 NNHCLLKIKIHLHRYFETLMEDLKSYYYT*NRKKDLPLLSQIVDVL 381
NN C ++ +L + L E K + Y R K LPLL ++DVL
Sbjct: 717 NNDCKSQLNAYLMQMRTGLSEKAKDHVYV--RSKTLPLLKCVIDVL 760
>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 623
Score = 28.3 bits (60), Expect = 1.2
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Frame = +1
Query: 256 LLKIKIHLHRYFETLMEDLKSYYYT*NRKKDLPLLSQIVDVL*YTNDE-----GANTSIT 420
LLK+K+ F +D +S ++ +R++ PL+ I D Y N E A+ S++
Sbjct: 417 LLKLKVKNGPAFGLFNQDFESIFHRLSRQQPTPLIGAIAD---YGNPESCIGKAAHKSVS 473
Query: 421 VTNNDLNFRLITRLS 465
N+D + LS
Sbjct: 474 CANDDEVVSAVVSLS 488
>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
factor complex subunit Rna14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 733
Score = 26.6 bits (56), Expect = 3.5
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = -2
Query: 245 LSVRLEADCSIPCYVHSNRSKD---LAGRNVESCFSLTEKQTKPAVLNV 108
LSVRL P +VH+NR D +A + +S + + + PA L +
Sbjct: 610 LSVRLNGGNGFPGHVHNNREDDEVSIASTSSKSNVEMEDTRLLPASLEL 658
>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 716
Score = 26.2 bits (55), Expect = 4.7
Identities = 10/23 (43%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
Frame = +1
Query: 250 HCL--LKIKIHLHRYFETLMEDL 312
HCL + +++HLHR+ E + E+L
Sbjct: 619 HCLSNVSLQLHLHRFHELVSENL 641
>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 355
Score = 26.2 bits (55), Expect = 4.7
Identities = 10/35 (28%), Positives = 17/35 (48%)
Frame = +2
Query: 29 LYLHRICNSALWINFSQKQVESLHCQEH*AQQAWF 133
+++HRICN W N ++ Q ++ WF
Sbjct: 162 VHVHRICNLLHWCNTKTEEQTRAALQSWLPKELWF 196
>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
intermediate chain Dic1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 544
Score = 25.8 bits (54), Expect = 6.1
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Frame = +3
Query: 75 AKSKSNRYTAKNIKHSRLGLFLCETETRLHITP-SQIFASI*VNITWDAAVRFQSHRQQS 251
A S SN+ K I +L FLC+ ++TP + S N+ D ++ S Q
Sbjct: 28 AVSSSNKEGPKQISEDQLSNFLCKILKPTNLTPQTYSLESKSSNLVSDCELKISSVYQSY 87
Query: 252 LPTKDKDTFTP-IFRNINGR 308
T + P I + +N R
Sbjct: 88 SSTFNVSNHVPSISKTVNIR 107
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 25.8 bits (54), Expect = 6.1
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = -3
Query: 703 MFPLTLHEMCNRVTLNISDS*AFRCAHSTFNC 608
+ LTL MCN I S A +H F+C
Sbjct: 865 LLQLTLRRMCNESEYTIGTSNAKDVSHFVFSC 896
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 25.4 bits (53), Expect = 8.1
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +3
Query: 279 TPIFRNINGR-FKIILLYVEQKKRSTVAKPNRGRALIYERRR 401
T N+N + F +L V++ KRS P G+ + Y+RRR
Sbjct: 156 TSAIDNLNSQEFYGRVLNVQKAKRSRPHSPTPGKYMGYDRRR 197
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 25.4 bits (53), Expect = 8.1
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +3
Query: 219 AVRFQSHRQQSLPTKDKDTFTPIFRNINGRFKIILLY 329
+++ + +R QSLP + T TPI I+G ++ LLY
Sbjct: 1240 SLQLELNRLQSLPVSNDQTDTPI---ISGSQEVQLLY 1273
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,796,273
Number of Sequences: 5004
Number of extensions: 55859
Number of successful extensions: 128
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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