Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1380
         (714 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1037 - 23438205-23441219,23443509-23444513,23444627-23446708     29   3.7  
02_02_0571 - 11664292-11664809,11664900-11665750,11665837-11666468     28   6.4  

>07_03_1037 - 23438205-23441219,23443509-23444513,23444627-23446708
          Length = 2033

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
 Frame = +1

Query: 85   SRIVTLPRTLSTAGLVCFSVRLKQDSTLRPAKSLLRF---E*T*HGMLQSASNLTDNNHC 255
            +R++ + RT+    + CF  RL+ + +     S LRF   +     +L SAS L DN + 
Sbjct: 1007 ARLLIMTRTVVFVAVDCFKNRLEFNPSEEAEHSYLRFADVKRQCRSVLTSASELADNAYR 1066

Query: 256  LLKIKIHL 279
            + ++K  L
Sbjct: 1067 VKRVKREL 1074


>02_02_0571 - 11664292-11664809,11664900-11665750,11665837-11666468
          Length = 666

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +1

Query: 211 GMLQSASNLTDNNHCLLKIKIHLHRYFETLMEDLKSYYYT 330
           G++Q+   LTD   CL  ++   +  +E+L ED+KS+  T
Sbjct: 443 GIIQAVGQLTDVKECLQTLR---NNGWESLFEDVKSFCAT 479


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,473,136
Number of Sequences: 37544
Number of extensions: 302972
Number of successful extensions: 678
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)