Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1380
         (714 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70267-4|CAA94210.1|  314|Caenorhabditis elegans Hypothetical pr...    28   7.6  
U97013-5|AAB52338.1|  142|Caenorhabditis elegans Calponin protei...    28   7.6  

>Z70267-4|CAA94210.1|  314|Caenorhabditis elegans Hypothetical
           protein K04C1.3 protein.
          Length = 314

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/42 (30%), Positives = 26/42 (61%)
 Frame = +2

Query: 581 NCFYRRN*RTVKSRMGTSECSGIRNIQGHTITHFMKGQREHT 706
           N  Y ++ ++  S++ ++E +   N +GHT++HF+K    HT
Sbjct: 4   NLEYEKSPQSFSSKLRSTE-NQAANHKGHTLSHFLKIVVHHT 44


>U97013-5|AAB52338.1|  142|Caenorhabditis elegans Calponin protein 3
           protein.
          Length = 142

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +1

Query: 115 STAGLVCFSVRLKQDSTL--RPAKSLLRFE*T*HGMLQSASNLTDNNHCLLK 264
           +TAG + F+VR KQDS    + A  LL +     G   S S   DN H LLK
Sbjct: 5   TTAGGIGFAVRQKQDSKFIDKEATLLLEWIKKLSGENISTSGERDNFHNLLK 56


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,267,872
Number of Sequences: 27780
Number of extensions: 305118
Number of successful extensions: 652
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)