Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1378
         (720 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0480 - 23274945-23275196,23275558-23275623,23276709-232768...    31   0.92 
03_01_0480 - 3676529-3676687,3676767-3676931,3677044-3677220,367...    29   3.7  
12_02_1039 + 25610200-25610538,25611022-25611143,25611243-256113...    28   8.6  

>02_04_0480 -
           23274945-23275196,23275558-23275623,23276709-23276851,
           23276947-23277063,23277219-23278683,23279561-23280730
          Length = 1070

 Score = 31.1 bits (67), Expect = 0.92
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +1

Query: 121 MQLCVDTFCCQSSKSHNSKVKKLELNNKVRTDIFFACSTRR 243
           ++  VD  CC+SS + N+K+  L L      +I  ACST +
Sbjct: 640 LERVVDGVCCESSVALNNKMGNLILGEPKNKNISPACSTEK 680


>03_01_0480 -
           3676529-3676687,3676767-3676931,3677044-3677220,
           3678170-3678273,3678700-3678843,3679831-3679898,
           3680059-3680162,3680759-3680767,3681572-3681657,
           3681918-3683373
          Length = 823

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 436 CKLIHPHVNQKALKHPRMQIISLN 365
           CK +HP V Q A  HP +Q + +N
Sbjct: 710 CKALHPKVCQLAGMHPELQFLMVN 733


>12_02_1039 +
           25610200-25610538,25611022-25611143,25611243-25611390,
           25611681-25611818,25612106-25612165,25612234-25612392,
           25612714-25612912,25613156-25613260,25613339-25613475,
           25613812-25614037,25614119-25614282,25614408-25614524,
           25614622-25614864,25614959-25615054,25615270-25615287
          Length = 756

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 164 DLDDWQQKVSTQSCIPDETPSSPLPGH 84
           DL +WQ +++   C+P      PL GH
Sbjct: 364 DLVEWQIRIANGECLPLSQEQVPLNGH 390


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,657,815
Number of Sequences: 37544
Number of extensions: 380987
Number of successful extensions: 837
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)