Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1378
         (720 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13646-5|ABA00178.1|  353|Caenorhabditis elegans Hypothetical pr...    28   5.8  
AF026212-4|AAF99973.2|  386|Caenorhabditis elegans Hypothetical ...    28   5.8  
AC024775-7|AAK68451.1|  251|Caenorhabditis elegans Hypothetical ...    28   7.7  

>U13646-5|ABA00178.1|  353|Caenorhabditis elegans Hypothetical
           protein ZK783.6 protein.
          Length = 353

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +3

Query: 510 DIYNVYAVTHLETRVPRFLSLYSSTAAPFFVPKSITASPQNRQGSGSSFFYT 665
           D+  ++    + T +P+    YS+    +  P SI   P+   G GSSF Y+
Sbjct: 157 DVPEIHVAAPVTTPIPQ--PTYSAPPVSYQAPVSINNYPKGVSGVGSSFRYS 206


>AF026212-4|AAF99973.2|  386|Caenorhabditis elegans Hypothetical
           protein F52G3.5 protein.
          Length = 386

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 7/57 (12%)
 Frame = +1

Query: 82  LCPGRGEE------GVSSGMQLCVDTFCCQSSKSHN-SKVKKLELNNKVRTDIFFAC 231
           +CPGR +       G+      C++++CC++ KS + S ++++E+  +  TD + AC
Sbjct: 21  VCPGRRQSIGACLVGLCPAGSECINSYCCKNRKSGSLSPLEQVEVEAEETTD-YPAC 76


>AC024775-7|AAK68451.1|  251|Caenorhabditis elegans Hypothetical
           protein Y41D4A.1 protein.
          Length = 251

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 115 SGMQLCVDTFCCQSSKSHN 171
           SG+  C++ FCC S  S N
Sbjct: 70  SGVSTCINNFCCTSPNSQN 88


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,802,653
Number of Sequences: 27780
Number of extensions: 329000
Number of successful extensions: 701
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)