Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1377
(720 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF187730-1|AAG17032.1| 159|Drosophila melanogaster eukaryotic t... 154 1e-37
AY071396-1|AAL49018.1| 159|Drosophila melanogaster RE47768p pro... 153 3e-37
AF159443-1|AAF80375.1| 159|Drosophila melanogaster eukaryotic i... 153 3e-37
AE013599-3794|AAM68297.1| 159|Drosophila melanogaster CG3186-PB... 153 3e-37
AE013599-3793|AAF47151.1| 159|Drosophila melanogaster CG3186-PA... 153 3e-37
BT016135-1|AAV37020.1| 1218|Drosophila melanogaster GH06496p pro... 31 1.2
AE013599-3326|AAG22194.1| 1218|Drosophila melanogaster CG6562-PB... 31 1.2
AE013599-3325|AAF46796.1| 1218|Drosophila melanogaster CG6562-PA... 31 1.2
X56811-1|CAA40148.1| 1408|Drosophila melanogaster Serrate protei... 29 4.8
M35759-1|AAA28938.1| 1404|Drosophila melanogaster protein ( D.me... 29 4.8
AY128478-1|AAM75071.1| 950|Drosophila melanogaster RE42104p pro... 29 4.8
AE014297-4084|AAF56678.2| 1407|Drosophila melanogaster CG6127-PA... 29 4.8
AY121713-1|AAM52040.1| 959|Drosophila melanogaster SD04710p pro... 29 8.4
>AF187730-1|AAG17032.1| 159|Drosophila melanogaster eukaryotic
translation initiationfactor 5a protein.
Length = 159
Score = 154 bits (374), Expect = 1e-37
Identities = 76/115 (66%), Positives = 89/115 (77%), Gaps = 1/115 (0%)
Frame = -1
Query: 720 SKTGK-GTATVKFTWLGLISSMVKSMKISVPPPHNMDVPHVKREDYQLTDISDDGYLTLM 544
SKTGK G A V + + S+ K + P HNMDVP+VKRED QL ISDD +LTLM
Sbjct: 47 SKTGKHGHAKVHMVGIDIFSN--KKYEDICPSTHNMDVPNVKREDLQLIAISDDSFLTLM 104
Query: 543 ADNGDLREDLKIPDGDLGTQLRTDFDSGKELLCTVLKSCGEECVIAVKANTALDK 379
D+GDLREDLK+P+G+LG QLR DFDSGK+LLCTVLK+CGEECVIA+K NTALDK
Sbjct: 105 TDSGDLREDLKVPEGELGEQLRLDFDSGKDLLCTVLKACGEECVIAIKTNTALDK 159
>AY071396-1|AAL49018.1| 159|Drosophila melanogaster RE47768p
protein.
Length = 159
Score = 153 bits (370), Expect = 3e-37
Identities = 75/115 (65%), Positives = 89/115 (77%), Gaps = 1/115 (0%)
Frame = -1
Query: 720 SKTGK-GTATVKFTWLGLISSMVKSMKISVPPPHNMDVPHVKREDYQLTDISDDGYLTLM 544
SKTGK G A V + + S+ K + P HNMDVP+VKRED QL ISDD +LTLM
Sbjct: 47 SKTGKHGHAKVHMVGIDIFSN--KKYEDICPSTHNMDVPNVKREDLQLIAISDDSFLTLM 104
Query: 543 ADNGDLREDLKIPDGDLGTQLRTDFDSGKELLCTVLKSCGEECVIAVKANTALDK 379
++GDLREDLK+P+G+LG QLR DFDSGK+LLCTVLK+CGEECVIA+K NTALDK
Sbjct: 105 TESGDLREDLKVPEGELGEQLRLDFDSGKDLLCTVLKACGEECVIAIKTNTALDK 159
>AF159443-1|AAF80375.1| 159|Drosophila melanogaster eukaryotic
initiation factor 5A protein.
Length = 159
Score = 153 bits (370), Expect = 3e-37
Identities = 75/115 (65%), Positives = 89/115 (77%), Gaps = 1/115 (0%)
Frame = -1
Query: 720 SKTGK-GTATVKFTWLGLISSMVKSMKISVPPPHNMDVPHVKREDYQLTDISDDGYLTLM 544
SKTGK G A V + + S+ K + P HNMDVP+VKRED QL ISDD +LTLM
Sbjct: 47 SKTGKHGHAKVHMVGIDIFSN--KKYEDICPSTHNMDVPNVKREDLQLIAISDDSFLTLM 104
Query: 543 ADNGDLREDLKIPDGDLGTQLRTDFDSGKELLCTVLKSCGEECVIAVKANTALDK 379
++GDLREDLK+P+G+LG QLR DFDSGK+LLCTVLK+CGEECVIA+K NTALDK
Sbjct: 105 TESGDLREDLKVPEGELGEQLRLDFDSGKDLLCTVLKACGEECVIAIKTNTALDK 159
>AE013599-3794|AAM68297.1| 159|Drosophila melanogaster CG3186-PB,
isoform B protein.
Length = 159
Score = 153 bits (370), Expect = 3e-37
Identities = 75/115 (65%), Positives = 89/115 (77%), Gaps = 1/115 (0%)
Frame = -1
Query: 720 SKTGK-GTATVKFTWLGLISSMVKSMKISVPPPHNMDVPHVKREDYQLTDISDDGYLTLM 544
SKTGK G A V + + S+ K + P HNMDVP+VKRED QL ISDD +LTLM
Sbjct: 47 SKTGKHGHAKVHMVGIDIFSN--KKYEDICPSTHNMDVPNVKREDLQLIAISDDSFLTLM 104
Query: 543 ADNGDLREDLKIPDGDLGTQLRTDFDSGKELLCTVLKSCGEECVIAVKANTALDK 379
++GDLREDLK+P+G+LG QLR DFDSGK+LLCTVLK+CGEECVIA+K NTALDK
Sbjct: 105 TESGDLREDLKVPEGELGEQLRLDFDSGKDLLCTVLKACGEECVIAIKTNTALDK 159
>AE013599-3793|AAF47151.1| 159|Drosophila melanogaster CG3186-PA,
isoform A protein.
Length = 159
Score = 153 bits (370), Expect = 3e-37
Identities = 75/115 (65%), Positives = 89/115 (77%), Gaps = 1/115 (0%)
Frame = -1
Query: 720 SKTGK-GTATVKFTWLGLISSMVKSMKISVPPPHNMDVPHVKREDYQLTDISDDGYLTLM 544
SKTGK G A V + + S+ K + P HNMDVP+VKRED QL ISDD +LTLM
Sbjct: 47 SKTGKHGHAKVHMVGIDIFSN--KKYEDICPSTHNMDVPNVKREDLQLIAISDDSFLTLM 104
Query: 543 ADNGDLREDLKIPDGDLGTQLRTDFDSGKELLCTVLKSCGEECVIAVKANTALDK 379
++GDLREDLK+P+G+LG QLR DFDSGK+LLCTVLK+CGEECVIA+K NTALDK
Sbjct: 105 TESGDLREDLKVPEGELGEQLRLDFDSGKDLLCTVLKACGEECVIAIKTNTALDK 159
>BT016135-1|AAV37020.1| 1218|Drosophila melanogaster GH06496p protein.
Length = 1218
Score = 31.5 bits (68), Expect = 1.2
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -3
Query: 226 PPR*RHSQYLTPLTSPTRSVVSPPAPV 146
PPR S+ TP+++PTR V SP P+
Sbjct: 1121 PPRQMQSKQATPVSTPTRQVGSPKDPI 1147
>AE013599-3326|AAG22194.1| 1218|Drosophila melanogaster CG6562-PB,
isoform B protein.
Length = 1218
Score = 31.5 bits (68), Expect = 1.2
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -3
Query: 226 PPR*RHSQYLTPLTSPTRSVVSPPAPV 146
PPR S+ TP+++PTR V SP P+
Sbjct: 1121 PPRQMQSKQATPVSTPTRQVGSPKDPI 1147
>AE013599-3325|AAF46796.1| 1218|Drosophila melanogaster CG6562-PA,
isoform A protein.
Length = 1218
Score = 31.5 bits (68), Expect = 1.2
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -3
Query: 226 PPR*RHSQYLTPLTSPTRSVVSPPAPV 146
PPR S+ TP+++PTR V SP P+
Sbjct: 1121 PPRQMQSKQATPVSTPTRQVGSPKDPI 1147
>X56811-1|CAA40148.1| 1408|Drosophila melanogaster Serrate protein
protein.
Length = 1408
Score = 29.5 bits (63), Expect = 4.8
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = -2
Query: 224 PSLTSLAIPHPPHFADAFRSLAPSSRNTYPNLKGI*GFCWPNRTVI 87
P+L+ + P + R+L PS R P L CWPN+ V+
Sbjct: 1043 PALSETCLSSPCNVRGDCRALEPSRRVAPPRLPAK-SSCWPNQAVV 1087
>M35759-1|AAA28938.1| 1404|Drosophila melanogaster protein (
D.melanogaster serrate(Ser) mRNA, complete cds. ).
Length = 1404
Score = 29.5 bits (63), Expect = 4.8
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = -2
Query: 224 PSLTSLAIPHPPHFADAFRSLAPSSRNTYPNLKGI*GFCWPNRTVI 87
P+L+ + P + R+L PS R P L CWPN+ V+
Sbjct: 1039 PALSETCLSSPCNVRGDCRALEPSRRVAPPRLPAK-SSCWPNQAVV 1083
>AY128478-1|AAM75071.1| 950|Drosophila melanogaster RE42104p
protein.
Length = 950
Score = 29.5 bits (63), Expect = 4.8
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = -2
Query: 224 PSLTSLAIPHPPHFADAFRSLAPSSRNTYPNLKGI*GFCWPNRTVI 87
P+L+ + P + R+L PS R P L CWPN+ V+
Sbjct: 816 PALSETCLSSPCNVRGDCRALEPSRRVAPPRLPAK-SSCWPNQAVV 860
>AE014297-4084|AAF56678.2| 1407|Drosophila melanogaster CG6127-PA
protein.
Length = 1407
Score = 29.5 bits (63), Expect = 4.8
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = -2
Query: 224 PSLTSLAIPHPPHFADAFRSLAPSSRNTYPNLKGI*GFCWPNRTVI 87
P+L+ + P + R+L PS R P L CWPN+ V+
Sbjct: 1042 PALSETCLSSPCNVRGDCRALEPSRRVAPPRLPAK-SSCWPNQAVV 1086
>AY121713-1|AAM52040.1| 959|Drosophila melanogaster SD04710p
protein.
Length = 959
Score = 28.7 bits (61), Expect = 8.4
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -3
Query: 226 PPR*RHSQYLTPLTSPTRSVVSP 158
PPR S+ TP+++PTR V SP
Sbjct: 862 PPRQMQSKQATPVSTPTRQVGSP 884
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,159,299
Number of Sequences: 53049
Number of extensions: 671246
Number of successful extensions: 2032
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2027
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3211306956
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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