Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1377
         (720 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z27079-13|CAA81597.2|  195|Caenorhabditis elegans Hypothetical p...    77   1e-14
Z49967-1|CAA90247.1|  161|Caenorhabditis elegans Hypothetical pr...    75   5e-14
CU457743-2|CAM36365.1|  695|Caenorhabditis elegans Hypothetical ...    31   0.83 
AF106576-1|AAC78177.2|  664|Caenorhabditis elegans Hypothetical ...    31   1.1  
U39470-2|AAC71118.1|  862|Caenorhabditis elegans Temporarily ass...    28   5.8  
Z70310-6|CAE17904.1|  293|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>Z27079-13|CAA81597.2|  195|Caenorhabditis elegans Hypothetical
           protein T05G5.10 protein.
          Length = 195

 Score = 77.0 bits (181), Expect = 1e-14
 Identities = 44/113 (38%), Positives = 70/113 (61%), Gaps = 3/113 (2%)
 Frame = -1

Query: 720 SKTGK-GTATVKFTWLGLISSMVKSMKISVPPPHNMDVPHVKREDYQLTDISDDGYLTLM 544
           SKTGK G A V    + + ++  K ++   P  HNMDVP VKR +Y L  I +DG+ +LM
Sbjct: 84  SKTGKHGHAKVHMVAIDIFTT--KKLEDICPSTHNMDVPVVKRREYILMSI-EDGFCSLM 140

Query: 543 -ADNGDLREDLKIPDGDLGTQLRTDFDSGK-ELLCTVLKSCGEECVIAVKANT 391
             ++ +L++DLK+P+GDLG  +R   +  +  +L  V+ +CGEE ++  K +T
Sbjct: 141 DPESCELKDDLKMPEGDLGNTIREALEKDEGSVLVQVVAACGEEAILGYKIST 193


>Z49967-1|CAA90247.1|  161|Caenorhabditis elegans Hypothetical
           protein F54C9.1 protein.
          Length = 161

 Score = 74.9 bits (176), Expect = 5e-14
 Identities = 45/113 (39%), Positives = 69/113 (61%), Gaps = 3/113 (2%)
 Frame = -1

Query: 720 SKTGK-GTATVKFTWLGLISSMVKSMKISVPPPHNMDVPHVKREDYQLTDISDDGYLTLM 544
           SKTGK G A V    + + +S  K ++   P  HNMDVP VKR +Y L  I DDGY +LM
Sbjct: 50  SKTGKHGHAKVHMVAIDIFTS--KKLEDICPSTHNMDVPVVKRREYLLMAI-DDGYCSLM 106

Query: 543 -ADNGDLREDLKIPDGDLGTQLRTDFDSGK-ELLCTVLKSCGEECVIAVKANT 391
             ++ + ++DLK+PD +LG Q+R  ++  +  +L  V+ + GEE ++  K +T
Sbjct: 107 DPESCEQKDDLKLPDTELGQQIRDAYEKDEGSVLVQVVSAIGEEAILGWKVST 159


>CU457743-2|CAM36365.1|  695|Caenorhabditis elegans Hypothetical
           protein K09E10.2 protein.
          Length = 695

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
 Frame = -1

Query: 621 NMDVPHVKREDYQLTDI--SDDGYLTLMADNGDLREDLKIPDGDLGTQLRTD-FDSGKEL 451
           N  +P +K++ Y L     ++ GY+  +   GDL+   KI D      LR D ++ G+  
Sbjct: 573 NKFIPFIKKKLYILDSFPRANSGYIARVP--GDLKNGKKIEDISKA-MLRPDGYERGRLR 629

Query: 450 LCTVLKSCGEEC 415
              ++K CG++C
Sbjct: 630 HAALVKECGDKC 641


>AF106576-1|AAC78177.2|  664|Caenorhabditis elegans Hypothetical
           protein W07E6.1 protein.
          Length = 664

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
 Frame = -1

Query: 660 MVKSMKISVPPPHNMDVPHVKREDYQLTDISDDGYLTLM---ADNGDLREDLKIPDGDLG 490
           +VK +K S    H  + P  + E  QL D  +DG   L    +D+ DLR+D    D D G
Sbjct: 43  LVKKVKKSAKKAHEEE-PIEQVEKLQLIDDDEDGLEGLSFPGSDDEDLRDDYSDDDSDAG 101

Query: 489 TQL 481
             L
Sbjct: 102 DHL 104


>U39470-2|AAC71118.1|  862|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 127 protein.
          Length = 862

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -1

Query: 651 SMKISVPPPHNMDVPHVKREDYQLTDISDDGYLTLMADNGDL 526
           SMK S PP H + V          +  S D Y++L A+NGD+
Sbjct: 574 SMKCS-PPRHKLSVASCHANPLSSSKSSVDLYVSLGAENGDI 614


>Z70310-6|CAE17904.1|  293|Caenorhabditis elegans Hypothetical
           protein R11A8.8 protein.
          Length = 293

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -1

Query: 561 GYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKELLC 445
           GYL      GD ++++K+ +G    Q+ +D D  K   C
Sbjct: 251 GYLPQQPKKGDKKKNIKLKEGRTEHQIVSDIDPAKLRAC 289


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,358,543
Number of Sequences: 27780
Number of extensions: 320979
Number of successful extensions: 951
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)