Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1377
(720 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice... 23 2.9
EF540769-1|ABQ14707.1| 620|Apis mellifera adenosine deaminase p... 22 6.7
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.7
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.7
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.7
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.7
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.7
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.7
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 6.7
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 6.7
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase... 22 6.7
>AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice
variant B protein.
Length = 810
Score = 23.0 bits (47), Expect = 2.9
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = -3
Query: 670 DIFNGKKYEDIC 635
D+ N +KYED+C
Sbjct: 597 DLSNERKYEDVC 608
>EF540769-1|ABQ14707.1| 620|Apis mellifera adenosine deaminase
protein.
Length = 620
Score = 21.8 bits (44), Expect = 6.7
Identities = 9/28 (32%), Positives = 13/28 (46%)
Frame = -2
Query: 224 PSLTSLAIPHPPHFADAFRSLAPSSRNT 141
P TS H +AF++L +NT
Sbjct: 121 PDFTSDVTERDNHLVNAFKTLTQEPKNT 148
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.7
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = +2
Query: 452 NSLPLSKSVR--NCVPRSPSGILRSSRRSPLSAIR 550
N L + +R N PSG +RS+ +P+S R
Sbjct: 344 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 378
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.7
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = +2
Query: 452 NSLPLSKSVR--NCVPRSPSGILRSSRRSPLSAIR 550
N L + +R N PSG +RS+ +P+S R
Sbjct: 344 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 378
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.7
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = +2
Query: 452 NSLPLSKSVR--NCVPRSPSGILRSSRRSPLSAIR 550
N L + +R N PSG +RS+ +P+S R
Sbjct: 344 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 378
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.7
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = +2
Query: 452 NSLPLSKSVR--NCVPRSPSGILRSSRRSPLSAIR 550
N L + +R N PSG +RS+ +P+S R
Sbjct: 344 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 378
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.7
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = +2
Query: 452 NSLPLSKSVR--NCVPRSPSGILRSSRRSPLSAIR 550
N L + +R N PSG +RS+ +P+S R
Sbjct: 344 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 378
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.7
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = +2
Query: 452 NSLPLSKSVR--NCVPRSPSGILRSSRRSPLSAIR 550
N L + +R N PSG +RS+ +P+S R
Sbjct: 344 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 378
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 6.7
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = +2
Query: 452 NSLPLSKSVR--NCVPRSPSGILRSSRRSPLSAIR 550
N L + +R N PSG +RS+ +P+S R
Sbjct: 412 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 446
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 6.7
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = +2
Query: 452 NSLPLSKSVR--NCVPRSPSGILRSSRRSPLSAIR 550
N L + +R N PSG +RS+ +P+S R
Sbjct: 412 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 446
>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
protein.
Length = 1143
Score = 21.8 bits (44), Expect = 6.7
Identities = 9/23 (39%), Positives = 11/23 (47%)
Frame = +1
Query: 397 CFDXDDALLTAGFQHGAQQFLAA 465
C D DD LL G++ AA
Sbjct: 670 CLDDDDTLLEVALSLGSEALSAA 692
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,079
Number of Sequences: 438
Number of extensions: 4216
Number of successful extensions: 13
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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