Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1375
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    27   0.17 
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   2.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   3.7  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   4.9  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    22   6.4  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   8.5  

>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 27.1 bits (57), Expect = 0.17
 Identities = 21/79 (26%), Positives = 30/79 (37%), Gaps = 7/79 (8%)
 Frame = -3

Query: 380 PRSXHPHVSKHHTLXRSPDQTHHMCVCT----EPSIRRPRGNKTI*GTNR---FKTKIHP 222
           PR  HP + +   L   P     + +       P +RR    +   G NR         P
Sbjct: 80  PRPPHPRLRREAELEAEPGNNRPVYISQPRPPHPRLRREAEPEAEPGNNRPVYIPQPRPP 139

Query: 221 KIRLRLQNELQGTTGNDNP 165
             RLR + EL+   GN+ P
Sbjct: 140 HPRLRREAELEAEPGNNRP 158


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
 Frame = -3

Query: 422 DKETLSAVLQRVHAPRSXHPHVSKHHTLXR----SPDQTHHMCVCTEPSIRRPR 273
           D+ ++        + RS  P  SK+  + +    SP+ T  +CVC     RR R
Sbjct: 62  DRSSIHEESYLAESSRSIDPCASKYCGIGKECELSPNSTIAVCVCMRKCPRRHR 115


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/37 (24%), Positives = 18/37 (48%)
 Frame = -2

Query: 231 NTSQDSTASSERTPRNDRKRQSKSXTAHESHVNKKRN 121
           N  Q   ++ E TP+ +RK  + +     S   +K++
Sbjct: 778 NKEQSPNSTKETTPKKERKTATTTQPVISSRKEQKKS 814


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 6/10 (60%), Positives = 10/10 (100%)
 Frame = +2

Query: 53  LWGVLAMGLF 82
           +WG++A+GLF
Sbjct: 349 IWGIIAIGLF 358


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 180 RKRQSKSXTAHESHVNKKRN 121
           RKR +K   A E  +NKKR+
Sbjct: 123 RKRGAKLTEAEEEVLNKKRS 142


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 324 SNSPYVCMYRAIYPPTPGKQN 262
           +++P       I+PPTPG  N
Sbjct: 289 TSTPNFLSEAKIFPPTPGSFN 309


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,048
Number of Sequences: 438
Number of extensions: 3840
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)