Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1373
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos...    31   0.12 
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    31   0.16 
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    29   0.84 
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    28   1.5  
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ...    27   2.6  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    26   5.9  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   7.8  

>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 591

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -2

Query: 500 SSFNDYHLVDYLSGEFLDEQYKGQRDLAGKASTLKKMM 387
           S   DYHL++ L      E YK QR   GK   LK+++
Sbjct: 31  SHLTDYHLMEKLGEGTFGEVYKSQRRKDGKVYALKRIL 68


>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
 Frame = -2

Query: 584 SGASALEHAXKLESDVTNSIREVIKTCESSFNDYHLVDYLSGEFLDEQYKGQRD-LAGKA 408
           S  S L+ +  +E +    +  V++ CE  F  +    YL      E  KG+ D L  + 
Sbjct: 165 SKLSGLDDSSFMEEEFVWQVDNVLQECEKKFTPHSKGSYLKENLKSELRKGRLDELMCEN 224

Query: 407 STLKKMMDK 381
           + LK+ +DK
Sbjct: 225 TALKEKIDK 233


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = -2

Query: 566 EHAXKLESDVTNSIREVIKTCESSFNDYHLV--DYLSGEFLDEQYKGQRDL 420
           E   +L   V N I  ++KTC +S ND  ++  DY+S +    + K Q+DL
Sbjct: 749 ESQKELMYGVRNDIDALVKTCTTSLNDADIILSDYISDQKSKFESK-QQDL 798


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -2

Query: 575 SALEHAXKLESDVTNSIREVIKTCESSFNDYHLVDYLSGEFLDEQY 438
           S L+   K +S+  N IR +I   E++    H    +S  FL+E Y
Sbjct: 669 SQLKKVYKPKSEAINPIRTIISNWENNSYTNHSSYQISNLFLEEDY 714


>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -2

Query: 575 SALEHAXKLESDVTNSIREVIKTCESSFNDYHLVDYLSGEFLDEQ 441
           S  ++  ++E DV  S++        +  DYH    LSGE LD +
Sbjct: 139 SQQKYFDEVEKDVQGSLKSKDGFRSVTLKDYHRQKLLSGEILDAE 183


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 248 ILRHIFLLITFQNGFERNGGVTCKIFICSIRG 343
           +LR +    +  NG E++    C+ F C+IRG
Sbjct: 191 MLRQLIKFRSHLNGDEKSALDGCRFFTCAIRG 222


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
           EF hand and WH2 motif |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1794

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -1

Query: 504 REQLQRLPPGRLLVRGIPRRTVQGPARPRRQGLDPQ 397
           R  +Q + PG L     P+RT   P  P+R G+ PQ
Sbjct: 516 RTGMQPMMPG-LQQPMAPQRTGMQPMMPQRTGMQPQ 550



 Score = 25.4 bits (53), Expect = 7.8
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
 Frame = -1

Query: 531 QHPGGHQDLREQ---LQRLPPGRLLVRG--IPRRTVQGPARPRRQGLDPQ 397
           Q PG  Q +  Q   +Q + P R  ++    P+RT   P  P+R G+ PQ
Sbjct: 578 QMPGMQQPMAPQRTGMQPMMPQRTGMQQPMAPQRTGMQPMMPQRTGMQPQ 627


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,300,953
Number of Sequences: 5004
Number of extensions: 44070
Number of successful extensions: 112
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)