Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1373
(690 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0039 - 319871-319914,320021-320084,320198-320263,320397-32... 45 5e-05
11_01_0040 - 304439-304482,304589-304652,304766-304831,305509-30... 35 0.053
03_05_0650 - 26423829-26424179,26424379-26424612,26424961-264252... 31 1.1
12_02_0911 + 24236374-24237582 30 2.0
03_05_0534 + 25343973-25344267,25344510-25344979 29 2.6
03_02_0471 + 8734292-8734788,8735168-8735654,8735766-8736551 29 2.6
04_01_0363 + 4754650-4755912 29 4.6
04_01_0167 + 1864956-1865495 29 4.6
09_02_0549 + 10485415-10486107 28 6.1
03_06_0766 - 36106116-36106230,36106598-36106716,36106880-361069... 28 6.1
10_08_0180 + 15502809-15503312,15503399-15503454,15503934-155040... 28 8.0
06_03_0685 - 23499779-23500204 28 8.0
01_06_1162 + 35010414-35011106 28 8.0
>12_01_0039 -
319871-319914,320021-320084,320198-320263,320397-320458,
321211-321298,321401-321461,321542-321625,322332-322630
Length = 255
Score = 45.2 bits (102), Expect = 5e-05
Identities = 36/120 (30%), Positives = 57/120 (47%), Gaps = 3/120 (2%)
Frame = -2
Query: 689 EHATKLIDYLLMRG---KLTGSVTTXITYRAPANTSWESGASALEHAXKLESDVTNSIRE 519
+HA KL+ Y MRG +L VT + P A+E A LE V +
Sbjct: 139 DHAEKLMKYQNMRGGRVRLQSIVTPLTEFDHPEKGD---ALYAMELALALEKLVNEKLHN 195
Query: 518 VIKTCESSFNDYHLVDYLSGEFLDEQYKGQRDLAGKASTLKKMMDKHAALGEFXFDKKLL 339
+ + S ND L D++ EFL+EQ + + ++ + L+++ H G + FD+KLL
Sbjct: 196 -LHSVASRCNDPQLTDFVESEFLEEQVEAIKKISEYVAQLRRVGKGH---GVWHFDQKLL 251
>11_01_0040 -
304439-304482,304589-304652,304766-304831,305509-305640,
305744-305804,305885-306018,306310-306654
Length = 281
Score = 35.1 bits (77), Expect = 0.053
Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 3/120 (2%)
Frame = -2
Query: 689 EHATKLIDYLLMRG---KLTGSVTTXITYRAPANTSWESGASALEHAXKLESDVTNSIRE 519
+HA KLI Y MRG +L VT + P E G AL +
Sbjct: 171 DHAEKLIKYQNMRGGRVRLQSIVTPLTEFDHP-----EKG-DALYGELLSACPIYVFYSM 224
Query: 518 VIKTCESSFNDYHLVDYLSGEFLDEQYKGQRDLAGKASTLKKMMDKHAALGEFXFDKKLL 339
V C ND L D++ EFL+EQ + + ++ + L+++ H G + FD+KLL
Sbjct: 225 VASRC----NDPQLTDFVESEFLEEQVEAIKKISEYVAQLRRVGKGH---GVWHFDQKLL 277
>03_05_0650 -
26423829-26424179,26424379-26424612,26424961-26425236,
26425372-26425648,26425751-26425764,26425843-26425989,
26426306-26426366,26426570-26426604,26426688-26426882,
26428230-26428439,26428865-26428940,26429519-26429799
Length = 718
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = -2
Query: 563 HAXKLESDVTNSIREVIK-TCESSFNDYHLVDYLSGEFLDEQYKGQRDLAGKASTLKK 393
H L V S +E I T ES F YH+ YLS + + + K Q+ + G KK
Sbjct: 141 HFTVLVRGVPKSTKESISCTVESFFTKYHVSSYLSHQIIYKVGKLQKIVTGAKKAYKK 198
>12_02_0911 + 24236374-24237582
Length = 402
Score = 29.9 bits (64), Expect = 2.0
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
Frame = -2
Query: 644 LTGSVTTXITYRAPANTSW--ESGASALEHAX--KLESDVTNSIREVIKTCESSFNDYHL 477
L VT + R A ++GA+A + A +L+ S +EV +H+
Sbjct: 148 LPSKVTNLLLLRLKARNQQVVDAGAAAPQEAALLQLQQQTPASCQEVFVRSHGEEYGFHV 207
Query: 476 VDYLSGEFLDEQYKGQRDL 420
D+LS +EQY G L
Sbjct: 208 DDFLSDACSNEQYSGDSSL 226
>03_05_0534 + 25343973-25344267,25344510-25344979
Length = 254
Score = 29.5 bits (63), Expect = 2.6
Identities = 34/126 (26%), Positives = 50/126 (39%), Gaps = 1/126 (0%)
Frame = -1
Query: 687 ARDQAH*LPAHEGQADRLXNHXHHVQGPRQHVVGERRISPRARXQ-AGE*RHQQHPGGHQ 511
ARD H + A + D H H ++ RQ I AR + +GE Q P
Sbjct: 34 ARDGVHGVDAPQSSVDATEEHVH-IEDMRQRAAARCLIRCLARRRDSGERAQPQQPKPAS 92
Query: 510 DLREQLQRLPPGRLLVRGIPRRTVQGPARPRRQGLDPQEDDGQARRPRRVHXRQETPRIE 331
D L P L P T+ + QG+ + + + R RRV E PR +
Sbjct: 93 DDGANTGYLQPYPLP----PSSTLSSL---QSQGVTRRAEHHRGVRRRRVLAGGERPRAQ 145
Query: 330 HINILH 313
H+ ++H
Sbjct: 146 HV-VVH 150
>03_02_0471 + 8734292-8734788,8735168-8735654,8735766-8736551
Length = 589
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -2
Query: 581 GASALEHAXKLESDVTNSIREVIKTCESSFNDYHLV 474
G LE+ +D+TN+ E I T SS ND+ LV
Sbjct: 381 GCPHLEYWAVHVTDITNAALEAIGTYSSSLNDFRLV 416
>04_01_0363 + 4754650-4755912
Length = 420
Score = 28.7 bits (61), Expect = 4.6
Identities = 30/94 (31%), Positives = 40/94 (42%), Gaps = 4/94 (4%)
Frame = -1
Query: 615 VQGPRQHVVGERRISPRARXQAGE*RHQQHPGGHQDLREQLQRLPPGRLLVRGIPR---- 448
++GP GER + R QAG R Q+ GG + PP + G R
Sbjct: 1 MRGPPVSGSGERE---KGRRQAGPTR-QRRTGGRSTVDRDHVGGPPPVHGIDGPDRPGAD 56
Query: 447 RTVQGPARPRRQGLDPQEDDGQARRPRRVHXRQE 346
RTV+ R G +P Q RR RVH R++
Sbjct: 57 RTVRRRPGSARLGTNPAGRPWQGRRHVRVHRRRQ 90
>04_01_0167 + 1864956-1865495
Length = 179
Score = 28.7 bits (61), Expect = 4.6
Identities = 31/113 (27%), Positives = 40/113 (35%), Gaps = 4/113 (3%)
Frame = -1
Query: 663 PAHEGQADRLXNHXHHVQGPRQHVVGERRISPRARXQAGE*RHQQHPGGHQDLREQLQRL 484
P GQ HH P HVVGE + P +A R + Q R +R+
Sbjct: 61 PRRAGQRSSTAAPRHHRPSPALHVVGE-LVPPGDAEEARGLRPRDLDRPRQ-ARHDHRRV 118
Query: 483 PPGRLLVRGIPRRTVQGPARPRRQGLDPQEDDGQA----RRPRRVHXRQETPR 337
G +V P V + + DG+A RRPR R E R
Sbjct: 119 VVGDAVVGAEPLDVVLAEEAKGGHAKEGEPRDGEAGGELRRPRVAEVRHEARR 171
>09_02_0549 + 10485415-10486107
Length = 230
Score = 28.3 bits (60), Expect = 6.1
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Frame = -1
Query: 630 NHXHHVQGPRQHVVGERRISPRARXQA--GE*RHQQHPGGHQDLREQLQRLPPGRLLVRG 457
N +VQ P Q ++ + + R A +HQ+ G +L G L+R
Sbjct: 97 NRHLNVQPPPQRIIVKGTVKGRIVPPAIVSSLQHQRQQGKQCQENNSSLQLQRGSTLLRQ 156
Query: 456 IPRRTVQGPARP 421
PR+ + P RP
Sbjct: 157 HPRQVLSAPGRP 168
>03_06_0766 - 36106116-36106230,36106598-36106716,36106880-36106960,
36107062-36107118,36107350-36107373,36107810-36107909,
36107983-36108053,36108132-36108236,36108674-36108847,
36109406-36109555,36109701-36109871,36109968-36110024,
36110107-36110142,36110165-36110357,36110439-36110578,
36110960-36111166,36111442-36111498,36111711-36111809,
36112289-36112408,36112865-36113032,36113450-36113510,
36113611-36113720,36114132-36114263,36114344-36114511,
36115118-36115182,36115242-36115372,36115450-36115487,
36116272-36116373,36116480-36116537,36117479-36117580,
36117695-36117909,36118158-36118307,36118699-36118858,
36118984-36119042,36119287-36119443,36119536-36119681,
36121376-36121648,36122889-36122891
Length = 1457
Score = 28.3 bits (60), Expect = 6.1
Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = -2
Query: 530 SIREVIKTCESSFNDYHLVDYLSGEFLDEQYKGQRDLAGKASTLKKMM-DKHAALGEFXF 354
S++++ K C ++D + + +S E L+E TLK +M +K A+ G F
Sbjct: 1356 SVQQLYKICTQYWDDKYNTESVSEEVLNEMKTLMNGKDASDGTLKSLMNEKDASDGTFLL 1415
Query: 353 DKKL 342
++++
Sbjct: 1416 NEEI 1419
>10_08_0180 +
15502809-15503312,15503399-15503454,15503934-15504053,
15504190-15504260,15504603-15504696,15504772-15504978,
15505406-15505657,15505781-15505889,15506112-15506179,
15506278-15506347,15506429-15506503,15506600-15506691,
15506779-15506860
Length = 599
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = -1
Query: 408 LDPQEDDGQARRPRRVHXRQETPRIEHINILHVTPPLRSN--PF*NVISKKIWRKIV 244
L PQ D G +R +++ R+ + I +LH T LR+ + ++W+K+V
Sbjct: 492 LQPQPDLGFMKRLQQILGRKHQRNLHAIYVLHPTLGLRTAILAMQMFVDGEVWKKVV 548
>06_03_0685 - 23499779-23500204
Length = 141
Score = 27.9 bits (59), Expect = 8.0
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Frame = -1
Query: 498 QLQRLPPGRLLVRGIP---RRTVQGPARPRR-QGLDPQEDDGQARRPRRVHXR 352
+++R PP R +RG+P R + P R R GL P+ RRP+ H R
Sbjct: 47 RIRRWPPRRGRIRGLPPLGGRICRRPPRGGRIHGLPPRGGRIHRRRPQGRHRR 99
>01_06_1162 + 35010414-35011106
Length = 230
Score = 27.9 bits (59), Expect = 8.0
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Frame = -1
Query: 630 NHXHHVQGPRQHVVGERRISPRARXQA--GE*RHQQHPGGHQDLREQLQRLPPGRLLVRG 457
N +VQ P Q ++ + + R A +HQ+ G +L G L+R
Sbjct: 97 NRHLNVQPPPQRIIVKGTVKGRIVPPATVSSLQHQRQQGKQCQENNSSLQLQRGGTLLRQ 156
Query: 456 IPRRTVQGPARP 421
PR+ + P RP
Sbjct: 157 HPRQVLSAPGRP 168
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,363,782
Number of Sequences: 37544
Number of extensions: 272003
Number of successful extensions: 672
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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