Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1372
(700 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 233 2e-62
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 111 7e-26
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 100 4e-22
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 98 9e-22
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 95 1e-20
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 70 3e-13
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 69 9e-13
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 68 1e-12
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 44 2e-05
SPAC4F8.07c |hxk2||hexokinase 2 |Schizosaccharomyces pombe|chr 1... 27 2.0
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 26 6.0
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 233 bits (569), Expect = 2e-62
Identities = 106/123 (86%), Positives = 112/123 (91%)
Frame = -1
Query: 700 NERFRCPEAXFQPSXLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIAD 521
NERFR PEA FQPS LG+E GIHE TYNSIMKCDVDIRKDLY N V+SGGTTMYPGIAD
Sbjct: 252 NERFRAPEALFQPSALGLENAGIHEATYNSIMKCDVDIRKDLYGNVVMSGGTTMYPGIAD 311
Query: 520 RMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLXTFQQMWISKQEYDESGPSIVH 341
RMQKEI ALAPS+MK+KI+APPERKYSVWIGGSILASL TFQQMWISKQEYDESGP IV+
Sbjct: 312 RMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVY 371
Query: 340 RKC 332
RKC
Sbjct: 372 RKC 374
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 111 bits (268), Expect = 7e-26
Identities = 51/121 (42%), Positives = 75/121 (61%)
Frame = -1
Query: 697 ERFRCPEAXFQPSXLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADR 518
E F PE F P +G EA G+H + SI+ D+D+R LY+N VLSGG+T+ G +R
Sbjct: 258 ECFSAPEVLFNPEMMGSEASGLHIQLFKSILLSDIDLRSTLYSNIVLSGGSTLLRGFGER 317
Query: 517 MQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLXTFQQMWISKQEYDESGPSIVHR 338
E+ A++ ++KI A PER ++ W+GGSILASL TF+++ I+ +EY I R
Sbjct: 318 FISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLITSEEYKNDQNVIFRR 377
Query: 337 K 335
+
Sbjct: 378 R 378
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 99.5 bits (237), Expect = 4e-22
Identities = 53/127 (41%), Positives = 78/127 (61%), Gaps = 12/127 (9%)
Frame = -1
Query: 700 NERFRCPEAXFQPSXLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIAD 521
+ER+ CPE FQP +G E G+ E +++I DVDIRK LY VLSGG++MY G+
Sbjct: 252 SERYECPECLFQPHLVGSEQPGLSEFIFDTIQAADVDIRKYLYRAIVLSGGSSMYAGLPS 311
Query: 520 RMQKEITAL--------APSTM---KIKIIAPPERKYSVWIGGSILASLXT-FQQMWISK 377
R++KEI L P+ + K+KI P R+++V+IGG++LA + MW+SK
Sbjct: 312 RLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFIGGAVLADIMAQNDHMWVSK 371
Query: 376 QEYDESG 356
E++E G
Sbjct: 372 AEWEEYG 378
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 98.3 bits (234), Expect = 9e-22
Identities = 52/125 (41%), Positives = 71/125 (56%), Gaps = 11/125 (8%)
Frame = -1
Query: 697 ERFRCPEAXFQPSXLGMEAC---------GIHETTYNSIMKCDVDIRKDLYANTVLSGGT 545
ERFR E F PS + G+HE Y SI+ CD ++R L N V++GGT
Sbjct: 294 ERFRISEILFNPSFSASRSAETTPPQGSVGLHELVYQSILACDSELRSPLLNNIVVTGGT 353
Query: 544 TMYPGIADRMQKEITALAP-STMKIKII-APPERKYSVWIGGSILASLXTFQQMWISKQE 371
++ PG+++R+Q E+ LA S + + +VW GGSILASL FQ +W+SKQE
Sbjct: 354 SLIPGLSERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSILASLDNFQHLWVSKQE 413
Query: 370 YDESG 356
YDE G
Sbjct: 414 YDEVG 418
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 94.7 bits (225), Expect = 1e-20
Identities = 47/108 (43%), Positives = 71/108 (65%), Gaps = 6/108 (5%)
Frame = -1
Query: 637 GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP 458
GI + N I +CDVDIR L N ++ GGT++ G + R+Q E++ L P + ++KI A
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHAS 384
Query: 457 P---ERKYSVWIGGSILASLXTFQQMWISKQEYDESGP---SIVHRKC 332
ER Y+ W+GGSIL+SL TF Q+WIS+QEY+E G +++ ++C
Sbjct: 385 GHVVERSYASWLGGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 70.1 bits (164), Expect = 3e-13
Identities = 39/122 (31%), Positives = 59/122 (48%)
Frame = -1
Query: 700 NERFRCPEAXFQPSXLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIAD 521
NERF PE F PS + + GI E S+ +I+ L N V GG +PG
Sbjct: 278 NERFMIPELLFSPSDIEIREAGIPEAVMQSVTHFPENIQAMLLENVVTIGGNCKFPGFHK 337
Query: 520 RMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLXTFQQMWISKQEYDESGPSIVH 341
R+ E+ +LAP+ ++K+ P + W S + L + I++ EY E G +I+
Sbjct: 338 RLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHWNANKITRSEYSEHGANIMT 396
Query: 340 RK 335
RK
Sbjct: 397 RK 398
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 68.5 bits (160), Expect = 9e-13
Identities = 39/135 (28%), Positives = 64/135 (47%), Gaps = 15/135 (11%)
Frame = -1
Query: 697 ERFRCPEAXFQPSXLGME-ACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIAD 521
ERF PE F P + + E N + +D+RK LY N VLSGG+T++ +
Sbjct: 285 ERFLAPEIFFNPEIASSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGN 344
Query: 520 RMQKEITALAPST--------------MKIKIIAPPERKYSVWIGGSILASLXTFQQMWI 383
R+Q+++ + + + +I+ ++ +VW GGS+LA F
Sbjct: 345 RLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQTPEFGSYCH 404
Query: 382 SKQEYDESGPSIVHR 338
+K +Y+E G SI R
Sbjct: 405 TKADYEEYGASIARR 419
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 68.1 bits (159), Expect = 1e-12
Identities = 31/118 (26%), Positives = 61/118 (51%)
Frame = -1
Query: 697 ERFRCPEAXFQPSXLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADR 518
E+ R PE F PS +G++ GI E + + + ++ ++ L +N +++GG PG+ R
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETR 653
Query: 517 MQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLXTFQQMWISKQEYDESGPSIV 344
+++E+T++ P I + W G S + F+ ++++EY E GP +
Sbjct: 654 IKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKGPEYI 711
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 44.4 bits (100), Expect = 2e-05
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = -1
Query: 583 KDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILA 413
K+LY++ ++ GG +PG A +++ I + + I +I PP + ++ W G I
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYN 586
Query: 412 SLXTFQQMWISKQEYDESGPSIVHRK 335
+ ++WI ++ G ++ K
Sbjct: 587 RIRIVSELWIKNSDWKMLGSRVLQYK 612
>SPAC4F8.07c |hxk2||hexokinase 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 455
Score = 27.5 bits (58), Expect = 2.0
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +3
Query: 258 NGDYKPELSSRPRAAGGSDARCVXKHFLCTMEGPDSSYSC 377
NG Y +++ P+ AG +C H L ME + +SC
Sbjct: 225 NGAYVEQMNQIPKLAG----KCTGDHMLINMEWGATDFSC 260
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/37 (29%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Frame = -1
Query: 436 WIGGSILASLXTFQQM---WISKQEYDESGPSIVHRK 335
++GGSI+A + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,424,251
Number of Sequences: 5004
Number of extensions: 45593
Number of successful extensions: 103
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -