Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1371
(660 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||... 30 0.34
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ... 29 0.45
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 26 5.5
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 5.5
SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyc... 26 5.5
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 26 5.5
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p... 25 7.3
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c... 25 7.3
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 25 7.3
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 25 9.7
>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1260
Score = 29.9 bits (64), Expect = 0.34
Identities = 19/90 (21%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Frame = -3
Query: 607 SRELARVEDEIATLRTVLQSKIRQSSDLKRKLGI-TVWKEITEDVNQGLKNVKESQVYQK 431
++E +E++ + ++Q + +++KL +++++ E N+G +++ S ++
Sbjct: 135 AKERVVLENQFSKTAGIVQGITGEFLRVEKKLDEEALYQDLKELYNEGFRSISVSLMHSY 194
Query: 430 TESVIKTTAEKTSSIIGGITAGVSSKLGQM 341
T + + EK + IG +SSKL M
Sbjct: 195 TYPLHEEVVEKIAKRIGFTDISLSSKLTPM 224
>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 29.5 bits (63), Expect = 0.45
Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Frame = -3
Query: 577 IATLRTVLQSKIRQSSDLKRKLGITVWKEITEDVNQGLKNV---KESQVYQKTESVIKTT 407
+ +L T+L +R +SDL + G+ +I + +N ++N ES + + SVIK
Sbjct: 176 VVSLVTILVPPMRMASDLVGQSGLDHLNKIMQSLNFSVENFFPSDESVSFSSSSSVIKRM 235
Query: 406 AEKTSSII 383
++ S++
Sbjct: 236 FKEHESVL 243
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 25.8 bits (54), Expect = 5.5
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = -3
Query: 301 GSAYENVKGKVAXRSNSTQSFDEALRDASGATSPPI 194
GS+ EN R+N++ SFD L D+S T+P I
Sbjct: 302 GSSIENNFLYTKRRANTSDSFDSVLSDSS--TTPTI 335
>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 551
Score = 25.8 bits (54), Expect = 5.5
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = -2
Query: 221 RQWRHLAPHPRAQAAALSGTLSCHSTRH 138
R ++ + PHPR A L +S T H
Sbjct: 365 RDYKDIMPHPRPSAVLLDKPVSLDQTSH 392
>SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 422
Score = 25.8 bits (54), Expect = 5.5
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -3
Query: 238 DEALRDASGATSPPIPEH 185
D A++DA GAT+P P H
Sbjct: 394 DHAMKDACGATNPIQPTH 411
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 25.8 bits (54), Expect = 5.5
Identities = 22/101 (21%), Positives = 44/101 (43%)
Frame = -3
Query: 496 KEITEDVNQGLKNVKESQVYQKTESVIKTTAEKTSSIIGGITAGVSSKLGQMRNSESFRS 317
+E +DV++ + E +V+Q + + TA+ T S ++ V L ++ + F
Sbjct: 107 EEDFDDVDEEMLRAAEMEVFQSCQPLAVNTADTTVS-HSTSSSNVPRSLNKIHDPSRFIK 165
Query: 316 IEERVGSAYENVKGKVAXRSNSTQSFDEALRDASGATSPPI 194
+ + + KVA SN+++ + ATS I
Sbjct: 166 DNDVENRIHVSSASKVASISNTSKPNPIVSENPISATSVSI 206
>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 752
Score = 25.4 bits (53), Expect = 7.3
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Frame = -3
Query: 463 KNVKESQVYQKTESVIKTTAEKTSSIIG--GITAGVSSKLGQMRNSESFRSIEERVGSAY 290
+NVKE + SV E I G GI V K+ + + ESF ER+G Y
Sbjct: 3 QNVKEKHAGKSDTSVSSLECEIDYHIEGSDGIPV-VEPKISEFVDMESFIRRVERLGKKY 61
Query: 289 ENVK 278
+K
Sbjct: 62 GAIK 65
>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
catalytic subunit|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1018
Score = 25.4 bits (53), Expect = 7.3
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -3
Query: 451 ESQVYQKTESVIKTTAEKTSSIIGGITAGVSSK 353
ES V+ K E++ + + +T + GIT +SSK
Sbjct: 806 ESFVFNKLEAMAQLPSPRTPVLDAGITQALSSK 838
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 25.4 bits (53), Expect = 7.3
Identities = 30/143 (20%), Positives = 67/143 (46%), Gaps = 5/143 (3%)
Frame = -3
Query: 637 EQADQLRAEWSRELARVEDEIATLRTVLQSKIRQSSDLKRKLGITVWK-EITEDVNQGLK 461
E +L A W + + ++ E+A L+ L S+ +++ +L + I+E+ + L+
Sbjct: 282 ETQKRLTALWESKSSELQSEVAALQEKLTSQQSLYNNVTEELNNNKQQLLISENSLRELQ 341
Query: 460 NVKESQVYQKTESVIKTTAEKTSSIIGGITAGVSSKLGQMRNSE-SFRSI---EERVGSA 293
+S V + V+K + S G+ + ++ KL ++N E SF + ++
Sbjct: 342 EKYDSVVSEL--QVVKENKNTSVSAGVGLFSPLAQKLSAVQNPEFSFTKVYSDNMKLQQK 399
Query: 292 YENVKGKVAXRSNSTQSFDEALR 224
++K ++ +N SF E ++
Sbjct: 400 VSSLKLQLDRLTNKFSSFCEQVK 422
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 25.0 bits (52), Expect = 9.7
Identities = 18/77 (23%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Frame = -2
Query: 611 MESRASPCRR*NRDFENCTAKQDPSK--LGLKT*TWHHGVERDHRGRQSGFEKRQRKPSI 438
+ S +S + +RD+ + +++ +G + H+G ER R R+ + R+ + S
Sbjct: 7 LSSGSSRIPKRHRDYRDEEPRRERGSGGIGREDPRGHYGSERPRRRRRDESDFRRHRESR 66
Query: 437 PKN*ICDKNDRREDVFD 387
++ D+ RRE +D
Sbjct: 67 ERSYREDERPRRERRYD 83
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,365,652
Number of Sequences: 5004
Number of extensions: 43197
Number of successful extensions: 150
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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