Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1371
         (660 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY578805-1|AAT07310.1|  753|Anopheles gambiae medea protein.           26   1.2  
AJ439060-1|CAD27752.1|  763|Anopheles gambiae hypothetical prote...    25   2.8  
AJ438610-9|CAD27481.1|  763|Anopheles gambiae hypothetical prote...    25   2.8  
AF395080-1|AAK97462.1|  537|Anopheles gambiae zinc finger transc...    25   2.8  
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    23   6.5  

>AY578805-1|AAT07310.1|  753|Anopheles gambiae medea protein.
          Length = 753

 Score = 25.8 bits (54), Expect = 1.2
 Identities = 15/44 (34%), Positives = 17/44 (38%), Gaps = 6/44 (13%)
 Frame = -2

Query: 197 HPRAQAAALSGTLSCHSTRH------MSFAISPLPYRGPAPRGW 84
           HP   A+   GT+S H   H      M  A S  P R   P  W
Sbjct: 182 HPSMVASGAYGTMSMHPQTHHSWAACMELAASADPSRNSGPSSW 225


>AJ439060-1|CAD27752.1|  763|Anopheles gambiae hypothetical protein
           protein.
          Length = 763

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -3

Query: 130 SLYRLSHTAARPREAGNSTHTKRNT 56
           S+  L  T+  PR AG+S++++RN+
Sbjct: 58  SVPTLPTTSGEPRAAGSSSNSRRNS 82


>AJ438610-9|CAD27481.1|  763|Anopheles gambiae hypothetical protein
           protein.
          Length = 763

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -3

Query: 130 SLYRLSHTAARPREAGNSTHTKRNT 56
           S+  L  T+  PR AG+S++++RN+
Sbjct: 58  SVPTLPTTSGEPRAAGSSSNSRRNS 82


>AF395080-1|AAK97462.1|  537|Anopheles gambiae zinc finger
           transcription factor pannier protein.
          Length = 537

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 506 HGVERDHRGRQSGFEKRQRKP 444
           HGV R    R+ G + R+RKP
Sbjct: 208 HGVNRPLAMRKDGIQTRKRKP 228


>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 23.4 bits (48), Expect = 6.5
 Identities = 26/130 (20%), Positives = 55/130 (42%), Gaps = 3/130 (2%)
 Frame = -3

Query: 601 ELARVEDEIATLRTVLQS---KIRQSSDLKRKLGITVWKEITEDVNQGLKNVKESQVYQK 431
           +LA V+DE+  LRT ++    +IR    L  K   T+     +  ++  + V   + Y  
Sbjct: 327 QLAAVDDELKKLRTSIEEQEHRIRNREALVAKTDSTIDTYRADIESKKQEYVALKEAYGT 386

Query: 430 TESVIKTTAEKTSSIIGGITAGVSSKLGQMRNSESFRSIEERVGSAYENVKGKVAXRSNS 251
               ++    K ++I  G+    S ++   R  +  R IE+ +     +   +V  R  +
Sbjct: 387 VRRTLQDVQAKQAAIERGM-RNASERV--TRIQKDARQIEQDLQERNRDGLSQVEQRKQA 443

Query: 250 TQSFDEALRD 221
            ++    L++
Sbjct: 444 VETEKAQLKE 453


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 587,427
Number of Sequences: 2352
Number of extensions: 10912
Number of successful extensions: 23
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 65650335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)