Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1370
         (690 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL355593-2|CAI41394.1|  649|Homo sapiens protocadherin 19 protein.     31   5.1  
BC017710-1|AAH17710.1|  423|Homo sapiens zinc finger protein 271...    30   8.9  
BC004510-1|AAH04510.2|  272|Homo sapiens ZNF271 protein protein.       30   8.9  
AF159567-1|AAD43569.1|  423|Homo sapiens epstein-barr virus-indu...    30   8.9  
AF153201-1|AAD38056.1|  423|Homo sapiens zinc finger protein dp ...    30   8.9  

>AL355593-2|CAI41394.1|  649|Homo sapiens protocadherin 19 protein.
          Length = 649

 Score = 30.7 bits (66), Expect = 5.1
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -1

Query: 159 MLSVLINYLVGNRKKKPYLCVNCLRTCCVLKCINILYFDNNKCI 28
           M+ V I     N++ + Y C NCL   C+L C   +   N+KC+
Sbjct: 197 MIFVAIKCKRDNKEIRTYNCSNCLTITCLLGC--FIKGQNSKCL 238


>BC017710-1|AAH17710.1|  423|Homo sapiens zinc finger protein 271
           protein.
          Length = 423

 Score = 29.9 bits (64), Expect = 8.9
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = -1

Query: 222 IHTDITNGFCCCCQHT*MNCIMLSVLINYLVGNRKKKPYLCVNCLRTCCVLKCINI 55
           IHT      C  C      C   + LI +   + ++KPY CV C R+C  L  + I
Sbjct: 327 IHTGEKPYKCDACGKAFSTC---TDLIEHQKTHAEEKPYQCVQCSRSCSQLSELTI 379


>BC004510-1|AAH04510.2|  272|Homo sapiens ZNF271 protein protein.
          Length = 272

 Score = 29.9 bits (64), Expect = 8.9
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = -1

Query: 222 IHTDITNGFCCCCQHT*MNCIMLSVLINYLVGNRKKKPYLCVNCLRTCCVLKCINI 55
           IHT      C  C      C   + LI +   + ++KPY CV C R+C  L  + I
Sbjct: 176 IHTGEKPYKCDACGKAFSTC---TDLIEHQKTHAEEKPYQCVQCSRSCSQLSELTI 228


>AF159567-1|AAD43569.1|  423|Homo sapiens epstein-barr virus-induced
           zinc finger protein protein.
          Length = 423

 Score = 29.9 bits (64), Expect = 8.9
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = -1

Query: 222 IHTDITNGFCCCCQHT*MNCIMLSVLINYLVGNRKKKPYLCVNCLRTCCVLKCINI 55
           IHT      C  C      C   + LI +   + ++KPY CV C R+C  L  + I
Sbjct: 327 IHTGEKPYKCDACGKAFSTC---TDLIEHQKTHAEEKPYQCVQCSRSCSQLSELTI 379


>AF153201-1|AAD38056.1|  423|Homo sapiens zinc finger protein dp
           protein.
          Length = 423

 Score = 29.9 bits (64), Expect = 8.9
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = -1

Query: 222 IHTDITNGFCCCCQHT*MNCIMLSVLINYLVGNRKKKPYLCVNCLRTCCVLKCINI 55
           IHT      C  C      C   + LI +   + ++KPY CV C R+C  L  + I
Sbjct: 327 IHTGEKPYKCDACGKAFSTC---TDLIEHQKTHAEEKPYQCVQCSRSCSQLSELTI 379


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,661,869
Number of Sequences: 237096
Number of extensions: 1562114
Number of successful extensions: 4137
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4137
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7895240574
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)