Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1370
         (690 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97008-14|AAB52302.2|  298|Caenorhabditis elegans Serpentine rec...    28   5.5  
Z75952-5|CAB00093.2|  149|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z49886-6|CAI79131.1|  149|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z49886-5|CAA90055.1|  152|Caenorhabditis elegans Hypothetical pr...    28   7.2  
AF026212-4|AAF99973.2|  386|Caenorhabditis elegans Hypothetical ...    28   7.2  

>U97008-14|AAB52302.2|  298|Caenorhabditis elegans Serpentine
           receptor, class x protein56 protein.
          Length = 298

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +2

Query: 77  QQVLKQFTHRYGFFFLFPTK*FIKTDNIIQF--IYVCWQQQQKPFVISV 217
           Q  +KQ++H  GFF LF ++  I T  II     +  W   +   + SV
Sbjct: 69  QSTMKQYSHHCGFFILFLSEFSILTHFIISINRAFAVWAPYRYETLFSV 117


>Z75952-5|CAB00093.2|  149|Caenorhabditis elegans Hypothetical
           protein F29D10.2 protein.
          Length = 149

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 114 KPYLCVNCLRTCCVLKC 64
           +P  C  C RTCC  +C
Sbjct: 78  RPKCCCTCCRTCCCTRC 94


>Z49886-6|CAI79131.1|  149|Caenorhabditis elegans Hypothetical
           protein C06A1.7 protein.
          Length = 149

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 114 KPYLCVNCLRTCCVLKC 64
           +P  C  C RTCC  +C
Sbjct: 80  RPKCCCTCCRTCCCTRC 96


>Z49886-5|CAA90055.1|  152|Caenorhabditis elegans Hypothetical
           protein C06A1.6 protein.
          Length = 152

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 114 KPYLCVNCLRTCCVLKC 64
           +P  C  C RTCC  +C
Sbjct: 83  RPKCCCTCCRTCCCTRC 99


>AF026212-4|AAF99973.2|  386|Caenorhabditis elegans Hypothetical
           protein F52G3.5 protein.
          Length = 386

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = -1

Query: 192 CCCQHT*MNCI-MLSVLINYLVGNRKKKPYLCVNCLRTCCVLKCINILYFDNNKC 31
           CC     +NC  +L+  + +L   +  + ++  NC +TC     +NI   + + C
Sbjct: 295 CCILTPQINCTDVLTGCLTHLCDRKGYRQFMTNNCAKTCARCHLVNITPSEIHDC 349


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,125,469
Number of Sequences: 27780
Number of extensions: 278363
Number of successful extensions: 689
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)