Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1367
(650 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL592424-4|CAI16377.1| 962|Homo sapiens sema domain, transmembr... 30 6.2
AL592424-3|CAI16378.1| 930|Homo sapiens sema domain, transmembr... 30 6.2
AL592424-2|CAI16376.1| 922|Homo sapiens sema domain, transmembr... 30 6.2
AL122064-1|CAB59243.1| 294|Homo sapiens hypothetical protein pr... 30 6.2
AF339154-1|AAL72100.1| 962|Homo sapiens semaphorin Y protein. 30 6.2
AF339153-1|AAL72099.1| 922|Homo sapiens semaphorin Y short isof... 30 6.2
AF339152-1|AAL72098.1| 930|Homo sapiens semaphorin Y short isof... 30 6.2
AF055020-1|AAC09365.1| 446|Homo sapiens unknown protein. 30 6.2
AB058772-1|BAB47498.1| 935|Homo sapiens KIAA1869 protein protein. 30 6.2
AB022434-1|BAB20670.1| 930|Homo sapiens semaphorin Y protein. 30 6.2
>AL592424-4|CAI16377.1| 962|Homo sapiens sema domain, transmembrane
domain (TM), and cytoplasmic domain, (semaphorin) 6C
protein.
Length = 962
Score = 30.3 bits (65), Expect = 6.2
Identities = 18/45 (40%), Positives = 21/45 (46%)
Frame = +3
Query: 429 QCVSARAXFANRQGAPRAGXXGFGLVPNSCSPGDPLVLERAPRGG 563
+C SA A A APR G G +P S P +L R P GG
Sbjct: 859 RCASAPARPALSAPAPRLGVGGGRRLPFSGHRAPPALLTRVPSGG 903
>AL592424-3|CAI16378.1| 930|Homo sapiens sema domain, transmembrane
domain (TM), and cytoplasmic domain, (semaphorin) 6C
protein.
Length = 930
Score = 30.3 bits (65), Expect = 6.2
Identities = 18/45 (40%), Positives = 21/45 (46%)
Frame = +3
Query: 429 QCVSARAXFANRQGAPRAGXXGFGLVPNSCSPGDPLVLERAPRGG 563
+C SA A A APR G G +P S P +L R P GG
Sbjct: 827 RCASAPARPALSAPAPRLGVGGGRRLPFSGHRAPPALLTRVPSGG 871
>AL592424-2|CAI16376.1| 922|Homo sapiens sema domain, transmembrane
domain (TM), and cytoplasmic domain, (semaphorin) 6C
protein.
Length = 922
Score = 30.3 bits (65), Expect = 6.2
Identities = 18/45 (40%), Positives = 21/45 (46%)
Frame = +3
Query: 429 QCVSARAXFANRQGAPRAGXXGFGLVPNSCSPGDPLVLERAPRGG 563
+C SA A A APR G G +P S P +L R P GG
Sbjct: 819 RCASAPARPALSAPAPRLGVGGGRRLPFSGHRAPPALLTRVPSGG 863
>AL122064-1|CAB59243.1| 294|Homo sapiens hypothetical protein
protein.
Length = 294
Score = 30.3 bits (65), Expect = 6.2
Identities = 18/45 (40%), Positives = 21/45 (46%)
Frame = +3
Query: 429 QCVSARAXFANRQGAPRAGXXGFGLVPNSCSPGDPLVLERAPRGG 563
+C SA A A APR G G +P S P +L R P GG
Sbjct: 191 RCASAPARPALSAPAPRLGVGGGRRLPFSGHRAPPALLTRVPSGG 235
>AF339154-1|AAL72100.1| 962|Homo sapiens semaphorin Y protein.
Length = 962
Score = 30.3 bits (65), Expect = 6.2
Identities = 18/45 (40%), Positives = 21/45 (46%)
Frame = +3
Query: 429 QCVSARAXFANRQGAPRAGXXGFGLVPNSCSPGDPLVLERAPRGG 563
+C SA A A APR G G +P S P +L R P GG
Sbjct: 859 RCASAPARPALSAPAPRLGVGGGRRLPFSGHRAPPALLTRVPSGG 903
>AF339153-1|AAL72099.1| 922|Homo sapiens semaphorin Y short isoform
2 protein.
Length = 922
Score = 30.3 bits (65), Expect = 6.2
Identities = 18/45 (40%), Positives = 21/45 (46%)
Frame = +3
Query: 429 QCVSARAXFANRQGAPRAGXXGFGLVPNSCSPGDPLVLERAPRGG 563
+C SA A A APR G G +P S P +L R P GG
Sbjct: 819 RCASAPARPALSAPAPRLGVGGGRRLPFSGHRAPPALLTRVPSGG 863
>AF339152-1|AAL72098.1| 930|Homo sapiens semaphorin Y short isoform
1 protein.
Length = 930
Score = 30.3 bits (65), Expect = 6.2
Identities = 18/45 (40%), Positives = 21/45 (46%)
Frame = +3
Query: 429 QCVSARAXFANRQGAPRAGXXGFGLVPNSCSPGDPLVLERAPRGG 563
+C SA A A APR G G +P S P +L R P GG
Sbjct: 827 RCASAPARPALSAPAPRLGVGGGRRLPFSGHRAPPALLTRVPSGG 871
>AF055020-1|AAC09365.1| 446|Homo sapiens unknown protein.
Length = 446
Score = 30.3 bits (65), Expect = 6.2
Identities = 18/45 (40%), Positives = 21/45 (46%)
Frame = +3
Query: 429 QCVSARAXFANRQGAPRAGXXGFGLVPNSCSPGDPLVLERAPRGG 563
+C SA A A APR G G +P S P +L R P GG
Sbjct: 343 RCASAPARPALSAPAPRLGVGGGRRLPFSGHRAPPALLTRVPSGG 387
>AB058772-1|BAB47498.1| 935|Homo sapiens KIAA1869 protein protein.
Length = 935
Score = 30.3 bits (65), Expect = 6.2
Identities = 18/45 (40%), Positives = 21/45 (46%)
Frame = +3
Query: 429 QCVSARAXFANRQGAPRAGXXGFGLVPNSCSPGDPLVLERAPRGG 563
+C SA A A APR G G +P S P +L R P GG
Sbjct: 832 RCASAPARPALSAPAPRLGVGGGRRLPFSGHRAPPALLTRVPSGG 876
>AB022434-1|BAB20670.1| 930|Homo sapiens semaphorin Y protein.
Length = 930
Score = 30.3 bits (65), Expect = 6.2
Identities = 18/45 (40%), Positives = 21/45 (46%)
Frame = +3
Query: 429 QCVSARAXFANRQGAPRAGXXGFGLVPNSCSPGDPLVLERAPRGG 563
+C SA A A APR G G +P S P +L R P GG
Sbjct: 827 RCASAPARPALSAPAPRLGVGGGRRLPFSGHRAPPALLTRVPSGG 871
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,010,690
Number of Sequences: 237096
Number of extensions: 1197809
Number of successful extensions: 2067
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2067
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7253890590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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