Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1364
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    26   4.1  
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz...    25   7.2  
SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   9.5  

>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1297

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 421 QN*TFLFTKILLSLHLCAEYDI 356
           +N  FLFT ILL  +LC + D+
Sbjct: 777 RNQPFLFTNILLRFYLCLKDDV 798


>SPAC3A11.05c |kms1||meiotic spindle pole body protein
           Kms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 248 IFTFNFHYTIFYSKDKVIIKSLLQNRLKCTFSTYEYNII 364
           +F   F +  FY  D ++   LLQ  L+  F+  E+ II
Sbjct: 557 LFYVLFLFACFYGLDYILCAELLQAFLRVVFTFCEHIII 595


>SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 231

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +3

Query: 129 N*IWKCFISMSNMKKKFF 182
           N  WKC++ + ++KK +F
Sbjct: 160 NETWKCYLHIQDVKKSYF 177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,072,927
Number of Sequences: 5004
Number of extensions: 35568
Number of successful extensions: 60
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)