Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1364
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L21758-1|AAA16827.1|  264|Caenorhabditis elegans osteonectin pro...    32   0.41 
AF036692-3|AAB88325.1|  264|Caenorhabditis elegans Osteonectin (...    32   0.41 
U53154-7|AAC25857.1|  356|Caenorhabditis elegans Nuclear hormone...    28   5.0  
AF273783-1|AAG15132.1|  358|Caenorhabditis elegans nuclear recep...    28   5.0  
AC006603-7|ABB51201.1|  576|Caenorhabditis elegans Hypothetical ...    28   5.0  

>L21758-1|AAA16827.1|  264|Caenorhabditis elegans osteonectin
           protein.
          Length = 264

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = -3

Query: 612 EWGKCLELDELEMEERC 562
           EWGKCL L E E++ERC
Sbjct: 248 EWGKCLGLKEGEIQERC 264


>AF036692-3|AAB88325.1|  264|Caenorhabditis elegans Osteonectin
           (sparc) related protein1 protein.
          Length = 264

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = -3

Query: 612 EWGKCLELDELEMEERC 562
           EWGKCL L E E++ERC
Sbjct: 248 EWGKCLGLKEGEIQERC 264


>U53154-7|AAC25857.1|  356|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 42 protein.
          Length = 356

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/66 (25%), Positives = 32/66 (48%)
 Frame = -2

Query: 244 LQHKLKKKFNH*NTHMKQIS*KNFFFMFDMLIKHFQI*LLHCYTANVFSDLPNQLDVLCC 65
           L+   K+ FN   TH+ Q    N+  M D+  +  ++ + H       SD+  + + L C
Sbjct: 123 LEETRKRVFNISETHVSQCC--NYKRMNDVFFEDIKLVMEHLLETFKKSDISQEQEKLLC 180

Query: 64  MNFINP 47
           ++F+ P
Sbjct: 181 VHFMVP 186


>AF273783-1|AAG15132.1|  358|Caenorhabditis elegans nuclear receptor
           NHR-42 protein.
          Length = 358

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/66 (25%), Positives = 32/66 (48%)
 Frame = -2

Query: 244 LQHKLKKKFNH*NTHMKQIS*KNFFFMFDMLIKHFQI*LLHCYTANVFSDLPNQLDVLCC 65
           L+   K+ FN   TH+ Q    N+  M D+  +  ++ + H       SD+  + + L C
Sbjct: 125 LEETRKRVFNISETHVSQCC--NYKRMNDVFFEDIKLVMEHLLETFKKSDISQEQEKLLC 182

Query: 64  MNFINP 47
           ++F+ P
Sbjct: 183 VHFMVP 188


>AC006603-7|ABB51201.1|  576|Caenorhabditis elegans Hypothetical
           protein B0524.7 protein.
          Length = 576

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -3

Query: 594 ELDELEMEERCDDFNENAE 538
           E+++LE E RC   NENAE
Sbjct: 193 EIEKLETEMRCQKMNENAE 211


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,411,336
Number of Sequences: 27780
Number of extensions: 196205
Number of successful extensions: 395
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 395
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)