Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1363
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0054 - 461526-461696,462732-462870,462952-463034                 31   1.2  
02_04_0318 - 21999640-21999705,21999706-21999768,21999822-219998...    28   6.2  
03_05_0354 + 23411485-23411802,23411886-23412176,23414610-234146...    28   8.2  

>03_01_0054 - 461526-461696,462732-462870,462952-463034
          Length = 130

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = +2

Query: 470 DVNDNCIVYMAH*KGSHNYAAKS*MTLLPALVMLVSRSVTLL 595
           DV D   +Y AH  GSH+YA+ S    LP L        TL+
Sbjct: 26  DVRDEERIYDAHIAGSHHYASDSFGERLPELAQATKGKETLV 67


>02_04_0318 -
           21999640-21999705,21999706-21999768,21999822-21999884,
           21999938-22000000,22001097-22001141,22001914-22002325,
           22003313-22003475,22004086-22004132,22004458-22004564,
           22004651-22004684,22004754-22004807,22005599-22005723
          Length = 413

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -3

Query: 584 HFYSPTLPELAVRSFMTWLHSYVNLFSEPCKRCSCHLHHTSL 459
           +F +P LP  A+R F+   H Y  L   PC+ C+  L  T +
Sbjct: 363 YFLNP-LPYQAIRLFLPSWHCYYFLNPLPCQVCTTELSLTEI 403


>03_05_0354 +
           23411485-23411802,23411886-23412176,23414610-23414675,
           23415186-23415645,23415963-23416189,23416362-23416649,
           23416955-23416966
          Length = 553

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -2

Query: 699 LIDGVGHGERLWRDPRP 649
           L+DG G G+RL R PRP
Sbjct: 178 LVDGAGAGDRLRRRPRP 194


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,450,014
Number of Sequences: 37544
Number of extensions: 337306
Number of successful extensions: 663
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)