Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1363
(700 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC064608-1|AAH64608.1| 311|Homo sapiens mediator complex subuni... 120 7e-27
AL713892-2|CAI17283.2| 311|Homo sapiens cofactor required for S... 120 7e-27
AL603649-2|CAH72529.2| 311|Homo sapiens cofactor required for S... 120 7e-27
AL513102-2|CAH72546.2| 311|Homo sapiens cofactor required for S... 120 7e-27
AL160271-7|CAI13386.2| 311|Homo sapiens cofactor required for S... 120 7e-27
AF230382-1|AAF37290.1| 273|Homo sapiens p37 TRAP/SMCC/PC2 subun... 120 7e-27
AF104252-1|AAD12721.1| 273|Homo sapiens transcriptional co-acti... 118 3e-26
AL713892-1|CAI17284.1| 237|Homo sapiens cofactor required for S... 116 8e-26
AL603649-1|CAH72530.1| 237|Homo sapiens cofactor required for S... 116 8e-26
AL513102-1|CAH72547.1| 237|Homo sapiens cofactor required for S... 116 8e-26
AL160271-6|CAI13387.1| 237|Homo sapiens cofactor required for S... 116 8e-26
DQ099387-1|AAZ13763.1| 237|Homo sapiens cofactor required for S... 115 1e-25
>BC064608-1|AAH64608.1| 311|Homo sapiens mediator complex subunit
27 protein.
Length = 311
Score = 120 bits (288), Expect = 7e-27
Identities = 54/107 (50%), Positives = 72/107 (67%), Gaps = 7/107 (6%)
Frame = -3
Query: 698 LLMEWVMVKGYGET-------LDLWTESRHHVFRKVTENAHAAMLHFYSPTLPELAVRSF 540
L ++ +VKGY E LD+W++S + VF+KVT++A A+LH+ P +P++ VRSF
Sbjct: 207 LFIDRTIVKGYNENVYTEDGKLDIWSKSNYQVFQKVTDHATTALLHYQLPQMPDVVVRSF 266
Query: 539 MTWLHSYVNLFSEPCKRCSCHLHHTSLLPPAWRDFRTLETFHDECKQ 399
MTWL SY+ LF PC+RC L LPP WRDFRTLE FHD C+Q
Sbjct: 267 MTWLRSYIKLFQAPCQRCGKFLQDG--LPPTWRDFRTLEAFHDTCRQ 311
>AL713892-2|CAI17283.2| 311|Homo sapiens cofactor required for Sp1
transcriptional activation, subunit 8, 34kDa protein.
Length = 311
Score = 120 bits (288), Expect = 7e-27
Identities = 54/107 (50%), Positives = 72/107 (67%), Gaps = 7/107 (6%)
Frame = -3
Query: 698 LLMEWVMVKGYGET-------LDLWTESRHHVFRKVTENAHAAMLHFYSPTLPELAVRSF 540
L ++ +VKGY E LD+W++S + VF+KVT++A A+LH+ P +P++ VRSF
Sbjct: 207 LFIDRTIVKGYNENVYTEDGKLDIWSKSNYQVFQKVTDHATTALLHYQLPQMPDVVVRSF 266
Query: 539 MTWLHSYVNLFSEPCKRCSCHLHHTSLLPPAWRDFRTLETFHDECKQ 399
MTWL SY+ LF PC+RC L LPP WRDFRTLE FHD C+Q
Sbjct: 267 MTWLRSYIKLFQAPCQRCGKFLQDG--LPPTWRDFRTLEAFHDTCRQ 311
>AL603649-2|CAH72529.2| 311|Homo sapiens cofactor required for Sp1
transcriptional activation, subunit 8, 34kDa protein.
Length = 311
Score = 120 bits (288), Expect = 7e-27
Identities = 54/107 (50%), Positives = 72/107 (67%), Gaps = 7/107 (6%)
Frame = -3
Query: 698 LLMEWVMVKGYGET-------LDLWTESRHHVFRKVTENAHAAMLHFYSPTLPELAVRSF 540
L ++ +VKGY E LD+W++S + VF+KVT++A A+LH+ P +P++ VRSF
Sbjct: 207 LFIDRTIVKGYNENVYTEDGKLDIWSKSNYQVFQKVTDHATTALLHYQLPQMPDVVVRSF 266
Query: 539 MTWLHSYVNLFSEPCKRCSCHLHHTSLLPPAWRDFRTLETFHDECKQ 399
MTWL SY+ LF PC+RC L LPP WRDFRTLE FHD C+Q
Sbjct: 267 MTWLRSYIKLFQAPCQRCGKFLQDG--LPPTWRDFRTLEAFHDTCRQ 311
>AL513102-2|CAH72546.2| 311|Homo sapiens cofactor required for Sp1
transcriptional activation, subunit 8, 34kDa protein.
Length = 311
Score = 120 bits (288), Expect = 7e-27
Identities = 54/107 (50%), Positives = 72/107 (67%), Gaps = 7/107 (6%)
Frame = -3
Query: 698 LLMEWVMVKGYGET-------LDLWTESRHHVFRKVTENAHAAMLHFYSPTLPELAVRSF 540
L ++ +VKGY E LD+W++S + VF+KVT++A A+LH+ P +P++ VRSF
Sbjct: 207 LFIDRTIVKGYNENVYTEDGKLDIWSKSNYQVFQKVTDHATTALLHYQLPQMPDVVVRSF 266
Query: 539 MTWLHSYVNLFSEPCKRCSCHLHHTSLLPPAWRDFRTLETFHDECKQ 399
MTWL SY+ LF PC+RC L LPP WRDFRTLE FHD C+Q
Sbjct: 267 MTWLRSYIKLFQAPCQRCGKFLQDG--LPPTWRDFRTLEAFHDTCRQ 311
>AL160271-7|CAI13386.2| 311|Homo sapiens cofactor required for Sp1
transcriptional activation, subunit 8, 34kDa protein.
Length = 311
Score = 120 bits (288), Expect = 7e-27
Identities = 54/107 (50%), Positives = 72/107 (67%), Gaps = 7/107 (6%)
Frame = -3
Query: 698 LLMEWVMVKGYGET-------LDLWTESRHHVFRKVTENAHAAMLHFYSPTLPELAVRSF 540
L ++ +VKGY E LD+W++S + VF+KVT++A A+LH+ P +P++ VRSF
Sbjct: 207 LFIDRTIVKGYNENVYTEDGKLDIWSKSNYQVFQKVTDHATTALLHYQLPQMPDVVVRSF 266
Query: 539 MTWLHSYVNLFSEPCKRCSCHLHHTSLLPPAWRDFRTLETFHDECKQ 399
MTWL SY+ LF PC+RC L LPP WRDFRTLE FHD C+Q
Sbjct: 267 MTWLRSYIKLFQAPCQRCGKFLQDG--LPPTWRDFRTLEAFHDTCRQ 311
>AF230382-1|AAF37290.1| 273|Homo sapiens p37 TRAP/SMCC/PC2 subunit
protein.
Length = 273
Score = 120 bits (288), Expect = 7e-27
Identities = 54/107 (50%), Positives = 72/107 (67%), Gaps = 7/107 (6%)
Frame = -3
Query: 698 LLMEWVMVKGYGET-------LDLWTESRHHVFRKVTENAHAAMLHFYSPTLPELAVRSF 540
L ++ +VKGY E LD+W++S + VF+KVT++A A+LH+ P +P++ VRSF
Sbjct: 169 LFIDRTIVKGYNENVYTEDGKLDIWSKSNYQVFQKVTDHATTALLHYQLPQMPDVVVRSF 228
Query: 539 MTWLHSYVNLFSEPCKRCSCHLHHTSLLPPAWRDFRTLETFHDECKQ 399
MTWL SY+ LF PC+RC L LPP WRDFRTLE FHD C+Q
Sbjct: 229 MTWLRSYIKLFQAPCQRCGKFLQDG--LPPTWRDFRTLEAFHDTCRQ 273
>AF104252-1|AAD12721.1| 273|Homo sapiens transcriptional
co-activator CRSP34 protein.
Length = 273
Score = 118 bits (283), Expect = 3e-26
Identities = 53/101 (52%), Positives = 69/101 (68%), Gaps = 7/101 (6%)
Frame = -3
Query: 680 MVKGYGET-------LDLWTESRHHVFRKVTENAHAAMLHFYSPTLPELAVRSFMTWLHS 522
+VKGY E LD+W++S + VF+KVT++A A+LH+ P +P++ VRSFMTWL S
Sbjct: 175 IVKGYNENVYTEDGKLDIWSKSNYQVFQKVTDHATTALLHYQLPQMPDVVVRSFMTWLRS 234
Query: 521 YVNLFSEPCKRCSCHLHHTSLLPPAWRDFRTLETFHDECKQ 399
Y+ LF PC+RC L LPP WRDFRTLE FHD C+Q
Sbjct: 235 YIKLFQGPCQRCGKFLQDG--LPPTWRDFRTLEAFHDTCRQ 273
>AL713892-1|CAI17284.1| 237|Homo sapiens cofactor required for Sp1
transcriptional activation, subunit 8, 34kDa protein.
Length = 237
Score = 116 bits (279), Expect = 8e-26
Identities = 48/86 (55%), Positives = 63/86 (73%)
Frame = -3
Query: 656 LDLWTESRHHVFRKVTENAHAAMLHFYSPTLPELAVRSFMTWLHSYVNLFSEPCKRCSCH 477
LD+W++S + VF+KVT++A A+LH+ P +P++ VRSFMTWL SY+ LF PC+RC
Sbjct: 154 LDIWSKSNYQVFQKVTDHATTALLHYQLPQMPDVVVRSFMTWLRSYIKLFQAPCQRCGKF 213
Query: 476 LHHTSLLPPAWRDFRTLETFHDECKQ 399
L LPP WRDFRTLE FHD C+Q
Sbjct: 214 LQDG--LPPTWRDFRTLEAFHDTCRQ 237
>AL603649-1|CAH72530.1| 237|Homo sapiens cofactor required for Sp1
transcriptional activation, subunit 8, 34kDa protein.
Length = 237
Score = 116 bits (279), Expect = 8e-26
Identities = 48/86 (55%), Positives = 63/86 (73%)
Frame = -3
Query: 656 LDLWTESRHHVFRKVTENAHAAMLHFYSPTLPELAVRSFMTWLHSYVNLFSEPCKRCSCH 477
LD+W++S + VF+KVT++A A+LH+ P +P++ VRSFMTWL SY+ LF PC+RC
Sbjct: 154 LDIWSKSNYQVFQKVTDHATTALLHYQLPQMPDVVVRSFMTWLRSYIKLFQAPCQRCGKF 213
Query: 476 LHHTSLLPPAWRDFRTLETFHDECKQ 399
L LPP WRDFRTLE FHD C+Q
Sbjct: 214 LQDG--LPPTWRDFRTLEAFHDTCRQ 237
>AL513102-1|CAH72547.1| 237|Homo sapiens cofactor required for Sp1
transcriptional activation, subunit 8, 34kDa protein.
Length = 237
Score = 116 bits (279), Expect = 8e-26
Identities = 48/86 (55%), Positives = 63/86 (73%)
Frame = -3
Query: 656 LDLWTESRHHVFRKVTENAHAAMLHFYSPTLPELAVRSFMTWLHSYVNLFSEPCKRCSCH 477
LD+W++S + VF+KVT++A A+LH+ P +P++ VRSFMTWL SY+ LF PC+RC
Sbjct: 154 LDIWSKSNYQVFQKVTDHATTALLHYQLPQMPDVVVRSFMTWLRSYIKLFQAPCQRCGKF 213
Query: 476 LHHTSLLPPAWRDFRTLETFHDECKQ 399
L LPP WRDFRTLE FHD C+Q
Sbjct: 214 LQDG--LPPTWRDFRTLEAFHDTCRQ 237
>AL160271-6|CAI13387.1| 237|Homo sapiens cofactor required for Sp1
transcriptional activation, subunit 8, 34kDa protein.
Length = 237
Score = 116 bits (279), Expect = 8e-26
Identities = 48/86 (55%), Positives = 63/86 (73%)
Frame = -3
Query: 656 LDLWTESRHHVFRKVTENAHAAMLHFYSPTLPELAVRSFMTWLHSYVNLFSEPCKRCSCH 477
LD+W++S + VF+KVT++A A+LH+ P +P++ VRSFMTWL SY+ LF PC+RC
Sbjct: 154 LDIWSKSNYQVFQKVTDHATTALLHYQLPQMPDVVVRSFMTWLRSYIKLFQAPCQRCGKF 213
Query: 476 LHHTSLLPPAWRDFRTLETFHDECKQ 399
L LPP WRDFRTLE FHD C+Q
Sbjct: 214 LQDG--LPPTWRDFRTLEAFHDTCRQ 237
>DQ099387-1|AAZ13763.1| 237|Homo sapiens cofactor required for Sp1
transcriptional activation subunit 8 34kDa protein.
Length = 237
Score = 115 bits (277), Expect = 1e-25
Identities = 48/86 (55%), Positives = 63/86 (73%)
Frame = -3
Query: 656 LDLWTESRHHVFRKVTENAHAAMLHFYSPTLPELAVRSFMTWLHSYVNLFSEPCKRCSCH 477
LD+W++S + VF+KVT++A A+LH+ P +P++ VRSFMTWL SY+ LF PC+RC
Sbjct: 154 LDIWSKSDYQVFQKVTDHATTALLHYQLPQMPDVVVRSFMTWLRSYIKLFQAPCQRCGKF 213
Query: 476 LHHTSLLPPAWRDFRTLETFHDECKQ 399
L LPP WRDFRTLE FHD C+Q
Sbjct: 214 LQDG--LPPTWRDFRTLEAFHDTCRQ 237
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,723,505
Number of Sequences: 237096
Number of extensions: 2029267
Number of successful extensions: 3018
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3005
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8063224416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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