Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1363
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41746-6|AAA83333.1|  388|Caenorhabditis elegans Mediator protei...    33   0.20 
U39993-1|AAA81086.1|  594|Caenorhabditis elegans Hypothetical pr...    30   1.4  
U23525-10|AAC46571.2|  503|Caenorhabditis elegans Hypothetical p...    27   9.8  
U23525-9|ABC71820.1|  766|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>U41746-6|AAA83333.1|  388|Caenorhabditis elegans Mediator protein
           27 protein.
          Length = 388

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
 Frame = -3

Query: 665 GETLDLWTE-----SRHHVFRKVTENAHAAMLHFYSPTLPELAVRSFM---TWLHSYVNL 510
           GE  DL+ +     S+  V+R+ T++A   +L   SP     A  +F     ++ SYVN 
Sbjct: 291 GEDEDLYNQEQILHSKRKVYREFTKSAKEIIL--CSPVTKFTAPTNFAQCNNYIQSYVNC 348

Query: 509 FSEPCKRCSCHLHHTSLLPP 450
           FS  C  C  HL     +PP
Sbjct: 349 FSTKCYYCKKHLR--QFMPP 366


>U39993-1|AAA81086.1|  594|Caenorhabditis elegans Hypothetical
           protein F47E1.3 protein.
          Length = 594

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +2

Query: 383 NTTMTIACTHREMFLMYGSPSTLVATEMCDVNDNCI 490
           NT + I CTH+ +FL++ SP+   +  M    +NC+
Sbjct: 242 NTHLLILCTHKMIFLLF-SPNFHQSIFMLSTQNNCV 276


>U23525-10|AAC46571.2|  503|Caenorhabditis elegans Hypothetical
           protein K11G12.6a protein.
          Length = 503

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +1

Query: 67  IYRRFIKDLFENKTISTYTI*IIHFSTILFRIY--DAIIFNLA*LDTLY*YYSL 222
           +YR   K LFE+  + ++ + + H S   F IY  D I+  +A + T+   YS+
Sbjct: 175 VYRLPYKILFEDDRLPSFALTLTHESFRKFMIYYIDVIVATMAIIFTIVNCYSM 228


>U23525-9|ABC71820.1|  766|Caenorhabditis elegans Hypothetical
           protein K11G12.6b protein.
          Length = 766

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +1

Query: 67  IYRRFIKDLFENKTISTYTI*IIHFSTILFRIY--DAIIFNLA*LDTLY*YYSL 222
           +YR   K LFE+  + ++ + + H S   F IY  D I+  +A + T+   YS+
Sbjct: 438 VYRLPYKILFEDDRLPSFALTLTHESFRKFMIYYIDVIVATMAIIFTIVNCYSM 491


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,706,913
Number of Sequences: 27780
Number of extensions: 321778
Number of successful extensions: 653
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)