Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1361
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit...   176   2e-45
SPBC1861.07 |||elongin C|Schizosaccharomyces pombe|chr 2|||Manual      32   0.091
SPAC14C4.01c ||SPAC19D5.08c|DUF1770 family protein|Schizosacchar...    30   0.37 
SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha...    27   2.0  
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc...    27   2.0  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    26   6.0  

>SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit
           Skp1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 161

 Score =  176 bits (429), Expect = 2e-45
 Identities = 88/164 (53%), Positives = 113/164 (68%), Gaps = 2/164 (1%)
 Frame = -3

Query: 692 MPNIKLQSSDNEVFVVDVEIAKCSVTIKTXXXXXXXXXXXXXXVPLPNVNSAILKKVIQW 513
           M  IKL SSDNE FVVD  IA+ S+ IK                PLPNV+S +L+KV++W
Sbjct: 1   MSKIKLISSDNEEFVVDQLIAERSMLIKNMLEDVGEINVPI---PLPNVSSNVLRKVLEW 57

Query: 512 ATYHKDD--PPLPEDDENKEKRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLDVT 339
             +HK+D      E+ + + K++ DI  WD  F+ VDQ  LFE++LA+NYLDIK LLD  
Sbjct: 58  CEHHKNDLYSGTEEESDIRLKKSTDIDEWDRKFMAVDQEMLFEIVLASNYLDIKPLLDTG 117

Query: 338 CKTVANMIKGKTPEEIRKTFNIKNDFTAAEEDQVRKENEWCEEK 207
           CKTVANMI+GK+PE+IRKTFNI NDFT  EE+Q+RKENEW E++
Sbjct: 118 CKTVANMIRGKSPEDIRKTFNIPNDFTPEEEEQIRKENEWAEDR 161


>SPBC1861.07 |||elongin C|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 97

 Score = 31.9 bits (69), Expect = 0.091
 Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
 Frame = -3

Query: 683 IKLQSSDNEVFVVDVEIAKCSVTIKTXXXXXXXXXXXXXXVPLPNVNSAILKKVIQWATY 504
           ++L S D  VF+++ EIA  S TI+                  P++ + +L+KV ++  Y
Sbjct: 6   VRLISGDGFVFILEKEIACLSGTIRAILNEGIFSEAQKNECTFPDIRATLLEKVCEYLHY 65

Query: 503 ---HKDDPPLPEDD 471
              +K+   +P+ D
Sbjct: 66  NYRYKNQLDIPKFD 79


>SPAC14C4.01c ||SPAC19D5.08c|DUF1770 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 244

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 488 PLPEDDENKEKRTDDISSWDADFLKVDQGT 399
           P+P  D NK   T D+SSW+ D+  +  G+
Sbjct: 9   PIPRSDSNK---TSDVSSWEEDYELISLGS 35


>SPAC6B12.11 |drc1|sld1|DNA replication protein
           Drc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -3

Query: 350 LDVTCKTVANMIKGKTPEEIRKTFNIKNDFTAAEEDQV 237
           L VT KTV   + G TP+  R+  N+  D +   +  V
Sbjct: 96  LQVTPKTVDKSLLGPTPQLSRRVLNLLEDMSPIADSHV 133


>SPAC25A8.01c ||snf2SR|fun thirty related protein
           Fft3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 922

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -3

Query: 488 PLPEDDENKEKRTDDISSWDADFLKVDQGTLFELILA-ANYLDIKGLLDVTCKTVA 324
           P  +DD N +  +DD S+ D    ++D   L E +L   N    + L D+T  T+A
Sbjct: 207 PEADDDSNDDMYSDDDSNADRWASRIDTAALKEEVLKYMNRCSTQDLADMTGCTLA 262


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 157 HSDNT*RCLQIAFIMVYFS 213
           H+D+  RCL++AF   YFS
Sbjct: 746 HADDFFRCLEVAFDYPYFS 764


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,634,732
Number of Sequences: 5004
Number of extensions: 53760
Number of successful extensions: 167
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)