Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1358
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    31   0.16 
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    27   3.4  
SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces pom...    25   7.9  
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc...    25   7.9  

>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +1

Query: 439  RARTVLPTRSGPSSNALPPRNRSRFNVPGT 528
            R + +LP RSG SS+ +P  N +  NVP T
Sbjct: 1016 RVKPLLPPRSGSSSSGVPAPNLTPVNVPPT 1045


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +1

Query: 1    FFFFFFKSNTLQLLVLDEYK 60
            +F +FFK+N +++ VLD +K
Sbjct: 1800 YFGYFFKTNRVEMEVLDSFK 1819


>SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 437

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +2

Query: 92  PSKNLRVNVPTS*VVKNSFRPSGLTEASY 178
           PSK + V+ PT    KN F  +GLT  SY
Sbjct: 156 PSKTIYVSDPTWGNHKNVFSRAGLTVKSY 184


>SPBC16A3.08c |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 21/84 (25%), Positives = 31/84 (36%)
 Frame = +1

Query: 406 MLTNTSLYRRARARTVLPTRSGPSSNALPPRNRSRFNVPGTTFTGRDKNRQTNNSGHLRW 585
           ++  ++  R+       P     +  A  PR R +       F    K  + NN+ H   
Sbjct: 44  LVAQSTTSRKRDPNQPTPRERTVNKKADQPRRRRQAPQGNEAFAREGKEARANNAAHPVD 103

Query: 586 YTITASNRQ*YLYRNGGARSGRAY 657
            T   SNR     RN  AR GR +
Sbjct: 104 ATGAPSNR-----RNARARRGREF 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,774,156
Number of Sequences: 5004
Number of extensions: 56893
Number of successful extensions: 121
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)