Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1358
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-...    31   1.0  
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-...    31   1.0  
U64859-10|AAC69091.2|  383|Caenorhabditis elegans Hypothetical p...    29   3.2  
Z81030-17|CAB02706.2|   72|Caenorhabditis elegans Hypothetical p...    29   4.2  
AL023828-13|CAA19457.2|  419|Caenorhabditis elegans Hypothetical...    29   4.2  

>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
           x-hybridizingprotein 1, isoform b protein.
          Length = 1169

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 20/67 (29%), Positives = 29/67 (43%)
 Frame = +1

Query: 337 GRSLMYESWLICPCP*CACNRIPMLTNTSLYRRARARTVLPTRSGPSSNALPPRNRSRFN 516
           G S+  E W ICP P        M+ N  +  ++  +  LP R+      LPP+     +
Sbjct: 546 GGSVCREGWCICPDP-------SMIVNRGICIQSGPKPTLPPRTPIPQVPLPPQLPISVH 598

Query: 517 VPGTTFT 537
           VP  T T
Sbjct: 599 VPQVTIT 605


>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
           x-hybridizingprotein 1, isoform a protein.
          Length = 1876

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 20/67 (29%), Positives = 29/67 (43%)
 Frame = +1

Query: 337 GRSLMYESWLICPCP*CACNRIPMLTNTSLYRRARARTVLPTRSGPSSNALPPRNRSRFN 516
           G S+  E W ICP P        M+ N  +  ++  +  LP R+      LPP+     +
Sbjct: 643 GGSVCREGWCICPDP-------SMIVNRGICIQSGPKPTLPPRTPIPQVPLPPQLPISVH 695

Query: 517 VPGTTFT 537
           VP  T T
Sbjct: 696 VPQVTIT 702


>U64859-10|AAC69091.2|  383|Caenorhabditis elegans Hypothetical
           protein R09F10.1 protein.
          Length = 383

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = +2

Query: 86  KKPSKNL--RVNVPTS*VVKNSFRPSGLTEASYILT 187
           +KP K +  R+ +P   ++KN   P+G ++ SY+LT
Sbjct: 11  QKPCKAVDDRIEIPVETLIKNRKYPNGNSDLSYVLT 46


>Z81030-17|CAB02706.2|   72|Caenorhabditis elegans Hypothetical
           protein C01G10.4 protein.
          Length = 72

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +1

Query: 544 DKNRQTNNSGHLRWYTITASNRQ*YLYRNGGARSG 648
           + N   NN+G+  +Y    +N   Y Y N G  +G
Sbjct: 28  NNNNYNNNNGYTTYYYYPNNNNNGYYYNNNGYNNG 62


>AL023828-13|CAA19457.2|  419|Caenorhabditis elegans Hypothetical
           protein Y17G7B.11 protein.
          Length = 419

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +2

Query: 11  FFLNLTPYNY*YWMNTSNIKTAQILKKPSKNLRVNVPTS*VVKNSFRP 154
           F LN+TP      +NT++  T  ILKK    + VN+P    V     P
Sbjct: 153 FDLNITPTAINPMVNTASKNTGLILKKGLVTITVNLPKRGYVAGEIMP 200


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,471,768
Number of Sequences: 27780
Number of extensions: 325475
Number of successful extensions: 746
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)