Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1356
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32F12.12c |||conserved fungal protein|Schizosaccharomyces po...    26   5.4  
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi...    25   7.2  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    25   7.2  
SPAC22F3.07c |atp20||F0-ATPase subunit G|Schizosaccharomyces pom...    25   9.5  

>SPBC32F12.12c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 164

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +1

Query: 580 IYFITYIVGSLCCLFISANLIA 645
           +YFI  +V  L C+F++ +LIA
Sbjct: 100 VYFIFSVVTFLSCIFMATSLIA 121


>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
           Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 965

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -3

Query: 393 YIITLQVIELVDYAYCNRLL*IFLKAFIT 307
           Y++ L +  ++D  + NRLL + L +F+T
Sbjct: 186 YVLELAMTVVLDIEFRNRLLRLLLSSFLT 214


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 322  QKYLK*SITISVVNKFNNL*SNYIEIAMQSR 414
            Q+ +K S+    + KF+ +    +EIAMQSR
Sbjct: 1009 QRKVKGSLNKMTLEKFDKISDQILEIAMQSR 1039


>SPAC22F3.07c |atp20||F0-ATPase subunit G|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 118

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -1

Query: 554 HYLTATVSEKSFGKMVGVLQKQFCLMLP 471
           HY T TV+E++ G+   ++QK   +  P
Sbjct: 20  HYSTKTVAEQAKGRFTPLIQKLSAVQQP 47


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,329,745
Number of Sequences: 5004
Number of extensions: 48231
Number of successful extensions: 81
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)