Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1355
         (710 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT001766-1|AAN71521.1|  533|Drosophila melanogaster RH09188p pro...    31   2.0  
AY058792-1|AAL14021.1|  460|Drosophila melanogaster SD10060p pro...    31   2.0  
AE013599-3693|AAF47067.3|  460|Drosophila melanogaster CG4797-PA...    31   2.0  
AE013599-3692|AAM68271.2|  533|Drosophila melanogaster CG4797-PB...    31   2.0  

>BT001766-1|AAN71521.1|  533|Drosophila melanogaster RH09188p
           protein.
          Length = 533

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 27/108 (25%), Positives = 48/108 (44%)
 Frame = +1

Query: 106 IINIIPYL*KWKTVILWRS*KVVIFSSLTYQYVLLYFSQTLVYCSG*AFVLTTQLMTN*T 285
           I+++IP L  W T+ + +S KVVIF+       L  F+  ++   G  ++  T      +
Sbjct: 133 ILSVIPLLLGWSTLAIAKSIKVVIFARF-----LCGFATGILGGPGQVYIAETAEPNLRS 187

Query: 286 RLCYENDSSHEKGVKMAKRLDSYLYPASVDYYCHI*PPYLYYDKIFVP 429
            L      ++  G+ M   L S +Y  SV +  ++ P        F+P
Sbjct: 188 LLIGAPYVAYSSGILMVYSLGSMMYWRSVAWCANVLPLLSMVSISFIP 235


>AY058792-1|AAL14021.1|  460|Drosophila melanogaster SD10060p
           protein.
          Length = 460

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 27/108 (25%), Positives = 48/108 (44%)
 Frame = +1

Query: 106 IINIIPYL*KWKTVILWRS*KVVIFSSLTYQYVLLYFSQTLVYCSG*AFVLTTQLMTN*T 285
           I+++IP L  W T+ + +S KVVIF+       L  F+  ++   G  ++  T      +
Sbjct: 60  ILSVIPLLLGWSTLAIAKSIKVVIFARF-----LCGFATGILGGPGQVYIAETAEPNLRS 114

Query: 286 RLCYENDSSHEKGVKMAKRLDSYLYPASVDYYCHI*PPYLYYDKIFVP 429
            L      ++  G+ M   L S +Y  SV +  ++ P        F+P
Sbjct: 115 LLIGAPYVAYSSGILMVYSLGSMMYWRSVAWCANVLPLLSMVSISFIP 162


>AE013599-3693|AAF47067.3|  460|Drosophila melanogaster CG4797-PA,
           isoform A protein.
          Length = 460

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 27/108 (25%), Positives = 48/108 (44%)
 Frame = +1

Query: 106 IINIIPYL*KWKTVILWRS*KVVIFSSLTYQYVLLYFSQTLVYCSG*AFVLTTQLMTN*T 285
           I+++IP L  W T+ + +S KVVIF+       L  F+  ++   G  ++  T      +
Sbjct: 60  ILSVIPLLLGWSTLAIAKSIKVVIFARF-----LCGFATGILGGPGQVYIAETAEPNLRS 114

Query: 286 RLCYENDSSHEKGVKMAKRLDSYLYPASVDYYCHI*PPYLYYDKIFVP 429
            L      ++  G+ M   L S +Y  SV +  ++ P        F+P
Sbjct: 115 LLIGAPYVAYSSGILMVYSLGSMMYWRSVAWCANVLPLLSMVSISFIP 162


>AE013599-3692|AAM68271.2|  533|Drosophila melanogaster CG4797-PB,
           isoform B protein.
          Length = 533

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 27/108 (25%), Positives = 48/108 (44%)
 Frame = +1

Query: 106 IINIIPYL*KWKTVILWRS*KVVIFSSLTYQYVLLYFSQTLVYCSG*AFVLTTQLMTN*T 285
           I+++IP L  W T+ + +S KVVIF+       L  F+  ++   G  ++  T      +
Sbjct: 133 ILSVIPLLLGWSTLAIAKSIKVVIFARF-----LCGFATGILGGPGQVYIAETAEPNLRS 187

Query: 286 RLCYENDSSHEKGVKMAKRLDSYLYPASVDYYCHI*PPYLYYDKIFVP 429
            L      ++  G+ M   L S +Y  SV +  ++ P        F+P
Sbjct: 188 LLIGAPYVAYSSGILMVYSLGSMMYWRSVAWCANVLPLLSMVSISFIP 235


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,877,332
Number of Sequences: 53049
Number of extensions: 435990
Number of successful extensions: 682
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3149551053
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)