Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1352
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0488 - 24847076-24847220,24847823-24847872,24848139-248482...    28   6.2  
04_04_1217 + 31820734-31820841,31820929-31821078,31821183-318212...    28   8.2  

>03_05_0488 -
           24847076-24847220,24847823-24847872,24848139-24848278,
           24848358-24848493,24848584-24848683,24848837-24848949,
           24849034-24849132,24849227-24849311,24849799-24850037,
           24850202-24850372,24850544-24850784,24850899-24851172,
           24851481-24851660,24852170-24852251,24852336-24852437,
           24853315-24853384,24853725-24853824,24853931-24854025,
           24854105-24854184,24854361-24854439,24854603-24854663,
           24855570-24855984
          Length = 1018

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -3

Query: 380 YLYKDNRIRRALSQNRLDGPQVRGSPRASPTS 285
           Y Y D R R+   ++  DG  V G+P A P +
Sbjct: 464 YAYNDERARQTAPESAQDGSVVLGTPVAPPVN 495


>04_04_1217 +
           31820734-31820841,31820929-31821078,31821183-31821281,
           31821398-31821490,31821585-31821851
          Length = 238

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +2

Query: 248 GIHIIWKVQSISVTSARLVATPEPAVRRVGSVRERAGSY 364
           G H+ W+  S+ V  A L     P +   G V ER   Y
Sbjct: 170 GTHLAWRKNSLRVRPAPLTVKVLPPIETDGWVEERIDEY 208


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,897,589
Number of Sequences: 37544
Number of extensions: 242541
Number of successful extensions: 467
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)