Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1351
         (477 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a...   159   2e-40
SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S...   159   2e-40
SPBC4F6.15c |swi10|rad23|DNA repair endonuclease|Schizosaccharom...    25   7.9  

>SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score =  159 bits (387), Expect = 2e-40
 Identities = 75/106 (70%), Positives = 89/106 (83%), Gaps = 1/106 (0%)
 Frame = -2

Query: 434 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMEHGYIGEFEIVDDHRAGK 255
           MVR +VL+D L +I NAE+RG+RQVLIRP SKVIVKFLTVM +HGYI EF  +DDHR+GK
Sbjct: 1   MVRQSVLADCLNNIVNAERRGRRQVLIRPSSKVIVKFLTVMQKHGYIDEFTEIDDHRSGK 60

Query: 254 IVVNLTGRLNKCGVISPRFDVPINDIERWTN-LLPSRQFGYLVLTT 120
           IV+ L GR+NKCGVISPRF+V + DIE+W N LLPSRQ G +VLTT
Sbjct: 61  IVIQLNGRINKCGVISPRFNVKLKDIEKWVNQLLPSRQVGVIVLTT 106



 Score = 39.9 bits (89), Expect = 2e-04
 Identities = 18/27 (66%), Positives = 19/27 (70%)
 Frame = -3

Query: 127 LQQSGGIMDHEEARRKHLGGKILGFFF 47
           L  S GIM H EAR K  GGKILGFF+
Sbjct: 104 LTTSRGIMSHNEARAKDAGGKILGFFY 130


>SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score =  159 bits (387), Expect = 2e-40
 Identities = 75/106 (70%), Positives = 89/106 (83%), Gaps = 1/106 (0%)
 Frame = -2

Query: 434 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMEHGYIGEFEIVDDHRAGK 255
           MVR +VL+D L +I NAE+RG+RQVLIRP SKVIVKFLTVM +HGYI EF  +DDHR+GK
Sbjct: 1   MVRQSVLADCLNNIVNAERRGRRQVLIRPSSKVIVKFLTVMQKHGYIDEFTEIDDHRSGK 60

Query: 254 IVVNLTGRLNKCGVISPRFDVPINDIERWTN-LLPSRQFGYLVLTT 120
           IV+ L GR+NKCGVISPRF+V + DIE+W N LLPSRQ G +VLTT
Sbjct: 61  IVIQLNGRINKCGVISPRFNVKLKDIEKWVNQLLPSRQVGVIVLTT 106



 Score = 39.9 bits (89), Expect = 2e-04
 Identities = 18/27 (66%), Positives = 19/27 (70%)
 Frame = -3

Query: 127 LQQSGGIMDHEEARRKHLGGKILGFFF 47
           L  S GIM H EAR K  GGKILGFF+
Sbjct: 104 LTTSRGIMSHNEARAKDAGGKILGFFY 130


>SPBC4F6.15c |swi10|rad23|DNA repair
           endonuclease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 252

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +1

Query: 139 PNCREGSRLVHLSISLMGTSKRGEMTPHLFSLPVRFTTILP 261
           P  ++ SR+   SI +    K   + PH+ ++P  +T I+P
Sbjct: 30  PTPQKVSRVTAHSILVNPRQKGNPLLPHVRNVPWEYTDIVP 70


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,809,158
Number of Sequences: 5004
Number of extensions: 34733
Number of successful extensions: 82
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)