Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1351
(477 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823 177 5e-45
02_03_0219 + 16541350-16541482,16541605-16541765,16541863-165419... 176 9e-45
02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289 104 4e-23
01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391,286... 42 2e-04
11_01_0526 - 4140853-4141017,4141416-4141619 28 3.4
05_01_0366 - 2867953-2868252,2868329-2868469,2868808-2869089,286... 28 4.5
02_02_0372 + 9522751-9522964,9523043-9523255,9523471-9523555,952... 28 4.5
07_03_1420 + 26448009-26448085,26448302-26448394,26448634-264487... 27 7.8
03_03_0226 + 15590276-15590469,15590515-15590539,15590865-155910... 27 7.8
>07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823
Length = 130
Score = 177 bits (430), Expect = 5e-45
Identities = 83/106 (78%), Positives = 95/106 (89%), Gaps = 1/106 (0%)
Frame = -2
Query: 434 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMEHGYIGEFEIVDDHRAGK 255
MVR++VL+DALK+++NAEKRGKRQVLIRP SKVI+KFL VM +HGYIGEFE VDDHR+GK
Sbjct: 1 MVRVSVLNDALKTMYNAEKRGKRQVLIRPSSKVIIKFLIVMQKHGYIGEFEFVDDHRSGK 60
Query: 254 IVVNLTGRLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTT 120
IVV L GRLNKCGVISPRFDV + +IE WT LLPSRQFGY+VLTT
Sbjct: 61 IVVELNGRLNKCGVISPRFDVGVKEIESWTARLLPSRQFGYIVLTT 106
Score = 48.8 bits (111), Expect = 2e-06
Identities = 20/27 (74%), Positives = 24/27 (88%)
Frame = -3
Query: 127 LQQSGGIMDHEEARRKHLGGKILGFFF 47
L S GIMDHEEARRK++GGK+LGFF+
Sbjct: 104 LTTSAGIMDHEEARRKNVGGKVLGFFY 130
>02_03_0219 +
16541350-16541482,16541605-16541765,16541863-16541940,
16543176-16543445
Length = 213
Score = 176 bits (428), Expect = 9e-45
Identities = 82/106 (77%), Positives = 95/106 (89%), Gaps = 1/106 (0%)
Frame = -2
Query: 434 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMEHGYIGEFEIVDDHRAGK 255
MVR++VL+DALK+++NAEKRGKRQV+IRP SKVI+KFL VM +HGYIGEFE VDDHR+GK
Sbjct: 1 MVRVSVLNDALKTMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEFVDDHRSGK 60
Query: 254 IVVNLTGRLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTT 120
IVV L GRLNKCGVISPRFDV + +IE WT LLPSRQFGY+VLTT
Sbjct: 61 IVVELNGRLNKCGVISPRFDVGVKEIESWTARLLPSRQFGYIVLTT 106
Score = 37.9 bits (84), Expect = 0.004
Identities = 17/23 (73%), Positives = 19/23 (82%)
Frame = -3
Query: 127 LQQSGGIMDHEEARRKHLGGKIL 59
L S GIMDHEEARRK++GGK L
Sbjct: 104 LTTSAGIMDHEEARRKNVGGKEL 126
>02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289
Length = 129
Score = 104 bits (249), Expect = 4e-23
Identities = 47/101 (46%), Positives = 72/101 (71%), Gaps = 1/101 (0%)
Frame = -2
Query: 419 VLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMEHGYIGEFEIVDDHRAGKIVVNL 240
+L+DAL+++ NAE+RGK L++P S V+V FL +M GYI +FE++D HR GKI V L
Sbjct: 5 ILNDALRTMVNAERRGKATALLQPISGVMVSFLNIMKHRGYIKKFEVIDPHRVGKINVEL 64
Query: 239 TGRLNKCGVISPRFDVPINDIERW-TNLLPSRQFGYLVLTT 120
GR+ C ++ R D+ +IE++ +LP+RQ+GY+V+TT
Sbjct: 65 HGRIKDCKALTYRQDIRAKEIEQYRVRMLPTRQWGYVVITT 105
Score = 34.7 bits (76), Expect = 0.039
Identities = 11/21 (52%), Positives = 20/21 (95%)
Frame = -3
Query: 112 GIMDHEEARRKHLGGKILGFF 50
G++DHEEA ++++GG++LG+F
Sbjct: 108 GVLDHEEAIKQNVGGQVLGYF 128
>01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391,
2863431-2863516,2863648-2866272
Length = 1139
Score = 42.3 bits (95), Expect = 2e-04
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -2
Query: 278 VDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDI 177
VDDH++G+I++ GRLNK GVIS R DV + +
Sbjct: 912 VDDHKSGEIILEFDGRLNKWGVISFRSDVKVKKL 945
>11_01_0526 - 4140853-4141017,4141416-4141619
Length = 122
Score = 28.3 bits (60), Expect = 3.4
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -2
Query: 260 GKIVVNLTGRLNKCGVISPRFDVPINDIERWT 165
G++ + LNKCGVI+P I+D+ T
Sbjct: 78 GRVHSIIENILNKCGVIAPNLPTKIDDLSHRT 109
>05_01_0366 -
2867953-2868252,2868329-2868469,2868808-2869089,
2869177-2869569,2869796-2869975,2870149-2871510
Length = 885
Score = 27.9 bits (59), Expect = 4.5
Identities = 18/55 (32%), Positives = 30/55 (54%)
Frame = -2
Query: 335 IVKFLTVMMEHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIER 171
++K LT +++ IG +EI +HR K+ L G L CGV +F + I++
Sbjct: 583 VIKVLTELLDQLDIGTYEIKLNHR--KL---LDGMLEICGVPPEKFRTVCSSIDK 632
>02_02_0372 +
9522751-9522964,9523043-9523255,9523471-9523555,
9524373-9524448,9524974-9525150,9525473-9525566,
9526357-9526466,9526568-9526657,9526752-9526832,
9528468-9529277,9530777-9530896
Length = 689
Score = 27.9 bits (59), Expect = 4.5
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -2
Query: 368 RQVLIRPCSKVIVKFLTVMMEHGY-IGEFEIVDDHRAGKIVVN 243
R + CS V+ K LT+ MEHGY + + E +D H + ++
Sbjct: 304 RAFIDNACSMVLKKSLTI-MEHGYAVIDLEKLDPHNVDDLFLS 345
>07_03_1420 +
26448009-26448085,26448302-26448394,26448634-26448727,
26448822-26448859,26448999-26449090,26449179-26449258,
26449332-26449388,26449420-26449449,26449505-26449597,
26449766-26449840,26449888-26449959
Length = 266
Score = 27.1 bits (57), Expect = 7.8
Identities = 12/47 (25%), Positives = 27/47 (57%)
Frame = -2
Query: 311 MEHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIER 171
+++G+ +I D +R K + +LTG++ +C + FD + + E+
Sbjct: 25 LQNGFQKMDKIKDSNRQSKQLEDLTGKMRECKRLIKEFDRILKEDEK 71
>03_03_0226 +
15590276-15590469,15590515-15590539,15590865-15591014,
15591166-15591594
Length = 265
Score = 27.1 bits (57), Expect = 7.8
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -2
Query: 260 GKIVVNLTGRLNKCGVISPRFDVPINDIERWT 165
G++ + L+KCGV++P I+D+ T
Sbjct: 83 GRVHPTIENILDKCGVVAPNLPTKIDDLSHST 114
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,737,192
Number of Sequences: 37544
Number of extensions: 229493
Number of successful extensions: 479
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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