Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1351
         (477 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025460-6|AAB70989.1|  130|Caenorhabditis elegans Ribosomal pro...   183   7e-47
U00032-8|AAA50632.2| 1163|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AF036693-10|AAK29789.1|  572|Caenorhabditis elegans Hypothetical...    28   3.0  
U41547-3|AAA83193.2|  145|Caenorhabditis elegans Hypothetical pr...    28   4.0  
AC024089-1|AAK09071.1|  641|Caenorhabditis elegans Hypothetical ...    27   5.3  

>AF025460-6|AAB70989.1|  130|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 22 protein.
          Length = 130

 Score =  183 bits (445), Expect = 7e-47
 Identities = 87/106 (82%), Positives = 99/106 (93%), Gaps = 1/106 (0%)
 Frame = -2

Query: 434 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMEHGYIGEFEIVDDHRAGK 255
           MVRMNVL+DAL +I+NAEKRGKRQVLIRP SKVIV+FLTVMM+HGYIGEFEIVDDHRAGK
Sbjct: 1   MVRMNVLADALNAINNAEKRGKRQVLIRPASKVIVRFLTVMMKHGYIGEFEIVDDHRAGK 60

Query: 254 IVVNLTGRLNKCGVISPRFDVPINDIERWTN-LLPSRQFGYLVLTT 120
           IVVNLTGRLNK  VISPR ++ +ND+E++TN LLPSRQFGYL+LTT
Sbjct: 61  IVVNLTGRLNKASVISPRLNIRLNDLEKYTNTLLPSRQFGYLILTT 106



 Score = 54.4 bits (125), Expect = 4e-08
 Identities = 24/27 (88%), Positives = 24/27 (88%)
 Frame = -3

Query: 127 LQQSGGIMDHEEARRKHLGGKILGFFF 47
           L  S GIMDHEEARRKHLGGKILGFFF
Sbjct: 104 LTTSAGIMDHEEARRKHLGGKILGFFF 130


>U00032-8|AAA50632.2| 1163|Caenorhabditis elegans Hypothetical protein
            F37A4.4 protein.
          Length = 1163

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = -2

Query: 422  NVLSDALKSIH--NAEKRGKRQVLIRPCSKVIVKFLTVMMEHGYIGEFEIVDDHRAGKIV 249
            NVL D+++ I+  N  K  KR   I  C+K     L V    GY    EI+  H A +  
Sbjct: 826  NVLIDSVREINATNLLKAVKRGAYINVCNKYGNTALHVATRRGYQNLVEILIKHGADRSF 885

Query: 248  VN 243
            +N
Sbjct: 886  LN 887


>AF036693-10|AAK29789.1|  572|Caenorhabditis elegans Hypothetical
           protein C49A9.2 protein.
          Length = 572

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = -1

Query: 159 APLTTVWLPSPYNKVVASWTMKKPEENTLE 70
           APL T        K VAS+  K PEEN+LE
Sbjct: 149 APLVTATESESIFKRVASFFQKSPEENSLE 178


>U41547-3|AAA83193.2|  145|Caenorhabditis elegans Hypothetical
           protein F22A3.2 protein.
          Length = 145

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 14/49 (28%), Positives = 28/49 (57%)
 Frame = +3

Query: 219 TLV*SACEIYNNLASSVIINDFKLSDVTVLHHHC*KLNDDFGTGPDEDL 365
           ++V +A E ++   +  +   F+  +V V +     ++DDFG+ PD+DL
Sbjct: 14  SVVLAASESHSGRQNYRVKGAFRCGNVPVKNVQVKLIDDDFGSDPDDDL 62


>AC024089-1|AAK09071.1|  641|Caenorhabditis elegans Hypothetical
           protein C36E6.1b protein.
          Length = 641

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = -2

Query: 281 IVDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIERWTN 162
           +VD     KI + +    NKCG I  +    +  +  WTN
Sbjct: 148 VVDQGDPSKITIEIPIPANKCGAIIGKGGEQMRKLRSWTN 187


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,983,859
Number of Sequences: 27780
Number of extensions: 194801
Number of successful extensions: 390
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 389
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)