Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1350
(700 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr... 244 7e-66
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 40 3e-04
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 37 0.003
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 37 0.003
SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch... 35 0.010
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 34 0.017
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 34 0.022
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 34 0.022
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 33 0.030
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 33 0.039
SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family |Schizosa... 33 0.052
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 32 0.091
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 31 0.12
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 29 0.48
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 29 0.64
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 29 0.85
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 28 1.5
SPBC776.12c |hsk1||serine/threonine protein kinase Hsk1|Schizosa... 28 1.5
SPCC965.06 |||potassium channel subunit |Schizosaccharomyces pom... 27 2.6
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom... 26 4.5
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M... 26 6.0
>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 593
Score = 244 bits (598), Expect = 7e-66
Identities = 118/188 (62%), Positives = 144/188 (76%)
Frame = -1
Query: 700 KPQKISPKSQGLVRSLLHDKIRDAYIHPQFLXDVMKPMKIEEIMAQEVQNXXGGELQRVA 521
KPQ I+PK QG VR L KIR A+++ +F +V KP+ I+ I+ QEV N GGELQRVA
Sbjct: 406 KPQTIAPKFQGTVRMLFLKKIRAAFLNGKFQSEVCKPLSIDNIIDQEVLNLSGGELQRVA 465
Query: 520 LVLCLGKPADVYLIDEPSAYLDSEQRLVAAKVIKRFILHAKRTGFVVEHDFIMATYLADR 341
+ L LG PADVYLIDEPSAYLDSEQR++A+KVI+RFI+++++T F+VEHDFIMATYLADR
Sbjct: 466 ICLALGMPADVYLIDEPSAYLDSEQRIIASKVIRRFIVNSRKTAFIVEHDFIMATYLADR 525
Query: 340 VIVFEGTPXSNATAHAPQSLLNGMNKFLELLGIPFXRDPNNFRPRINKHASVKDIEQKRA 161
VI+FEG P +A + PQSLL GMN FL+ L + F RDPN RPRINK S D EQK A
Sbjct: 526 VILFEGQPSRDARCNPPQSLLTGMNTFLKNLDVTFRRDPNTLRPRINKFDSQMDQEQKNA 585
Query: 160 GQYXFLED 137
G Y FLE+
Sbjct: 586 GNYFFLEN 593
Score = 88.2 bits (209), Expect = 1e-18
Identities = 48/117 (41%), Positives = 67/117 (57%)
Frame = -1
Query: 604 DVMKPMKIEEIMAQEVQNXXGGELQRVALVLCLGKPADVYLIDEPSAYLDSEQRLVAAKV 425
+VM ++ ++ +EV + GGELQR A+ + ADVY+ DEPS+YLD +QRL A +V
Sbjct: 202 EVMDHTDLQNLLNREVGHLSGGELQRFAIAAVATQKADVYMFDEPSSYLDIKQRLKAGRV 261
Query: 424 IKRFILHAKRTGFVVEHDFIMATYLADRVIVFEGTPXSNATAHAPQSLLNGMNKFLE 254
I R +L VVEHD + YL+D V V G P P S+ G+N FL+
Sbjct: 262 I-RSLLATTNYVIVVEHDLSVLDYLSDFVCVLYGVPSMYGVVTLPYSVREGINIFLD 317
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 39.9 bits (89), Expect = 3e-04
Identities = 29/115 (25%), Positives = 52/115 (45%)
Frame = -1
Query: 592 PMKIEEIMAQEVQNXXGGELQRVALVLCLGKPADVYLIDEPSAYLDSEQRLVAAKVIKRF 413
P + Q+ + GG+ QR+A+ L + + L+DE ++ LDS V + +
Sbjct: 1245 PNGYNTLCGQKGSSLSGGQKQRIAIARALIRNPKILLLDEATSALDSHSEKVVQEALN-- 1302
Query: 412 ILHAKRTGFVVEHDFIMATYLADRVIVFEGTPXSNATAHAPQSLLNGMNKFLELL 248
RT + H + + AD + VF+G + A HA L+ ++ EL+
Sbjct: 1303 AASQGRTTVAIAHR-LSSIQDADCIFVFDGGVIAEAGTHA--ELVKQRGRYYELV 1354
Score = 34.3 bits (75), Expect = 0.017
Identities = 23/91 (25%), Positives = 40/91 (43%)
Frame = -1
Query: 544 GGELQRVALVLCLGKPADVYLIDEPSAYLDSEQRLVAAKVIKRFILHAKRTGFVVEHDFI 365
GG+ QR+A+ + + L+DE ++ LDS+ ++ K + RT V+ H +
Sbjct: 570 GGQKQRIAIARAVISDPKILLLDEATSALDSKSEVLVQKALDN--ASRSRTTIVIAHR-L 626
Query: 364 MATYLADRVIVFEGTPXSNATAHAPQSLLNG 272
AD ++V +H LNG
Sbjct: 627 STIRNADNIVVVNAGKIVEQGSHNELLDLNG 657
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 36.7 bits (81), Expect = 0.003
Identities = 24/89 (26%), Positives = 47/89 (52%)
Frame = -1
Query: 592 PMKIEEIMAQEVQNXXGGELQRVALVLCLGKPADVYLIDEPSAYLDSEQRLVAAKVIKRF 413
P ++ + + +N GG++QR+A L + + ++DE ++ LDS+ L+ K I+
Sbjct: 1222 PNGLDTPLLEFSKNFSGGQIQRLAFARALLRNPRLLILDECTSALDSKSSLLLEKTIQ-- 1279
Query: 412 ILHAKRTGFVVEHDFIMATYLADRVIVFE 326
+ T ++ H + LADR+IV +
Sbjct: 1280 --NLSCTVLIITHQPSLMK-LADRIIVMD 1305
Score = 35.1 bits (77), Expect = 0.010
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = -1
Query: 544 GGELQRVALVLCLGKPADVYLIDEPSAYLDSEQRLVAAKVIKRFILHAK-RTGFVVEHD 371
GG+ QR+AL L + ++ ++DEP++ LD + + I+ H K +T V+ HD
Sbjct: 573 GGQQQRIALARALLRDTEILILDEPTSALDPITKNLVMDAIR---AHRKGKTTLVITHD 628
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 36.7 bits (81), Expect = 0.003
Identities = 21/86 (24%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Frame = -1
Query: 580 EEIMAQEVQNXXGGELQRVALVLCLGKPADVYLIDEPSAYLDSEQRLVAAKVIKRFILHA 401
+E++ + + GG ++AL + K D+ L+DEP+ +LD +V ++ F+++
Sbjct: 539 DELINMPIGSLSGGWKMKLALTRAMFKNPDILLLDEPTNHLD----VVNVAWLENFLVNQ 594
Query: 400 KR-TGFVVEHDFIMATYLADRVIVFE 326
K + +V HD ++ +I +E
Sbjct: 595 KDVSSIIVSHDSGFLDHVVQAIIHYE 620
Score = 32.3 bits (70), Expect = 0.069
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = -1
Query: 580 EEIMAQEVQNXXGGELQRVALVLCLGKPADVYLIDEPSAYLDSEQRLVAAKVIKRF 413
E + ++ GG+ ++ L C V ++DEP+ YLD + +K +K F
Sbjct: 894 ELVSHSRIKGLSGGQKVKLVLAACTWLRPHVIVLDEPTNYLDRDSLGALSKGLKNF 949
>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
ATPase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 726
Score = 35.1 bits (77), Expect = 0.010
Identities = 19/71 (26%), Positives = 36/71 (50%)
Frame = -1
Query: 544 GGELQRVALVLCLGKPADVYLIDEPSAYLDSEQRLVAAKVIKRFILHAKRTGFVVEHDFI 365
GG+ QR+A+ L + ++DE ++ LD E ++ K I+ + + T + H +
Sbjct: 622 GGQKQRIAIARALLRNPAFLILDEATSALDGEAEVMVDKTIQSLMHNRSMTTITIAHK-L 680
Query: 364 MATYLADRVIV 332
AD++IV
Sbjct: 681 ATIRRADQIIV 691
>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 34.3 bits (75), Expect = 0.017
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = -1
Query: 565 QEVQNXXGGELQRVALVLCLG-KPADVYLIDEPSAYLDSEQRLVAAKVIKRF 413
Q++ GG+ RVA CLG + + ++DEP+ +LD E + +KRF
Sbjct: 632 QKMITLSGGQKSRVAFA-CLGLQNPHILILDEPTNHLDMESMDALTRAVKRF 682
Score = 30.3 bits (65), Expect = 0.28
Identities = 21/82 (25%), Positives = 36/82 (43%)
Frame = -1
Query: 580 EEIMAQEVQNXXGGELQRVALVLCLGKPADVYLIDEPSAYLDSEQRLVAAKVIKRFILHA 401
+E+ + + GG R++L L D+ L+DEPS LD + + + ++
Sbjct: 345 QEMQSHATKTFSGGWRMRLSLARALFCQPDLLLLDEPSNMLD----VPSIAFLSEYLQTY 400
Query: 400 KRTGFVVEHDFIMATYLADRVI 335
K VV HD +A +I
Sbjct: 401 KNIVLVVSHDRSFLNEVATDII 422
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 33.9 bits (74), Expect = 0.022
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Frame = -1
Query: 544 GGELQRVALVLCLGKPADVYLIDEPSAYLD-SEQRLVAAKVIKRFILHAKRTGFVVEHDF 368
GG+ QRV+L L A+VY+ D+ + LD S R + +L K T + H+
Sbjct: 709 GGQKQRVSLARALYSNAEVYIFDDIFSALDVSTSRKIYESCFLSTLLQHK-TIILFTHNV 767
Query: 367 IMATYLADRVIVFEGTPXSNATAHAPQSLL 278
+ +A+ VIV + + + + Q L+
Sbjct: 768 SLCLPIAENVIVLKNSTAQLVSPDSIQELV 797
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 33.9 bits (74), Expect = 0.022
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Frame = -1
Query: 529 RVALVLCLGKPADVYLIDEPSAYLDSEQRLVAAKVIKRFI-LHAKRTGF---VVEHD 371
R+AL CLG + +DEP+ LD E AK + R + K+ F V+ HD
Sbjct: 1195 RLALAECLGVNCGILALDEPTTNLDEENICSLAKNLSRIVEFRRKQANFQLIVITHD 1251
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 33.5 bits (73), Expect = 0.030
Identities = 19/57 (33%), Positives = 29/57 (50%)
Frame = -1
Query: 544 GGELQRVALVLCLGKPADVYLIDEPSAYLDSEQRLVAAKVIKRFILHAKRTGFVVEH 374
GGE QRVA+ + K + L+DE ++ LD+ + R L + RT V+ H
Sbjct: 723 GGEKQRVAVARAILKDPSIILLDEATSALDTNTERQIQAALNR--LASGRTAIVIAH 777
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 33.1 bits (72), Expect = 0.039
Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Frame = -1
Query: 577 EIMAQEVQNXXGGELQRVALVLCLGKPADVYLIDEPSAYLDSEQRLVAAKVIKRFILHAK 398
E+ V + GG ++ L + + AD+ L+DEP+ +LD + ++ ++ K
Sbjct: 554 EMQENPVASLSGGWKMKLELARAMLQKADILLLDEPTNHLD----VANIAWLEAYLTSQK 609
Query: 397 R-TGFVVEHDFIMATYLADRVIVFEG 323
T +V HD ++ +I +EG
Sbjct: 610 NITCLIVSHDSSFLDHVCTDIIHYEG 635
Score = 28.7 bits (61), Expect = 0.85
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = -1
Query: 559 VQNXXGGELQRVALVLCLGKPADVYLIDEPSAYLDSE 449
+ + GG+ +V + CL + ++DEP+ +LD +
Sbjct: 908 ISSLSGGQKVKVVIAACLWNNPQLLVLDEPTNFLDRD 944
>SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 618
Score = 32.7 bits (71), Expect = 0.052
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = -1
Query: 580 EEIMAQEVQNXXGGELQRVALVLCLGKPADVYLIDEPSAYLDSE 449
+E+MA+ ++ GG RVAL L + L+DEP+ +LD E
Sbjct: 211 QEMMAKPTKDMSGGWRMRVALSRALFIKPSLLLLDEPTNHLDLE 254
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 31.9 bits (69), Expect = 0.091
Identities = 28/81 (34%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Frame = -1
Query: 610 LXDVMKPMKIEEIMAQEVQNXXGGE--LQRVALVLCLG--KPADVYLIDEPSAYLDSEQR 443
L VM P K + + N GGE L +ALV L KP +Y++DE A LD +
Sbjct: 1214 LFSVMPPKK----SWKNISNLSGGEKTLSSLALVFALHNYKPTPLYVMDEIDAALDFKNV 1269
Query: 442 LVAAKVIKRFILHAKRTGFVV 380
+ A IK K F+V
Sbjct: 1270 SIVANYIKE---RTKNAQFIV 1287
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 31.5 bits (68), Expect = 0.12
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Frame = -1
Query: 589 MKIEEIMAQEVQNXXGGELQRVALVLCLG----KPADVYLIDEPSAYLDSEQRLVAAKVI 422
+KI I + GG+ VAL L + KPA +Y++DE A LD ++I
Sbjct: 1073 VKIGSIWKDSLAELSGGQRSLVALALIMSLLKYKPAPMYILDEIDAALDLSHTQNIGRLI 1132
Query: 421 K 419
K
Sbjct: 1133 K 1133
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 29.5 bits (63), Expect = 0.48
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = -1
Query: 580 EEIMAQEVQNXXGGELQRVALVLCLGKPADVYLIDEPSAYLDSE 449
+E++A+ GG R+AL L + ++DEP+ +LD E
Sbjct: 411 DEMIAKRTNELSGGWRMRIALARILFIKPTLMMLDEPTNHLDLE 454
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 29.1 bits (62), Expect = 0.64
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = -1
Query: 481 IDEPSAYLDSEQ---RLVAAKVIKRFILHAKRTGFVVEHDFIMATY 353
ID S LDS R A V+ IL+ + TGF +DFI AT+
Sbjct: 965 IDYDSPELDSVYEGVRTTIAVVLSDLILNVEPTGFSFVYDFIRATF 1010
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1465
Score = 28.7 bits (61), Expect = 0.85
Identities = 19/72 (26%), Positives = 35/72 (48%)
Frame = -1
Query: 571 MAQEVQNXXGGELQRVALVLCLGKPADVYLIDEPSAYLDSEQRLVAAKVIKRFILHAKRT 392
+ Q+ + GG+ R++L + AD+YL+D+ L S + V+ +IK
Sbjct: 697 VGQKGASLSGGQKSRISLARAIYSQADIYLLDD---VLSSVDQHVSRDLIKNLF---GPE 750
Query: 391 GFVVEHDFIMAT 356
GF+ H ++ T
Sbjct: 751 GFLRTHCVVLTT 762
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 27.9 bits (59), Expect = 1.5
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = -1
Query: 544 GGELQRVALVLCLGKPADVYLIDEPSAYLDSEQRLVAAKVIKRFILHAKRTGFVVEHD 371
GG+ QR+AL + P + L+D+ + LD K + L RT +V H+
Sbjct: 742 GGQKQRIALARAVYSPTSIVLMDDVFSALDIHTSNWIYKHCFQSSLMENRTVILVTHN 799
>SPBC776.12c |hsk1||serine/threonine protein kinase
Hsk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 507
Score = 27.9 bits (59), Expect = 1.5
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 321 VPSNTITRSARYVAIIKSCSTTKPVRLAWRMNLLITL 431
+P N +R +YVAI K +T+ P R+ + +L L
Sbjct: 114 IPVNEDSRKPKYVAIKKIYATSSPARIYNELEILYLL 150
>SPCC965.06 |||potassium channel subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 344
Score = 27.1 bits (57), Expect = 2.6
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = -1
Query: 352 LADRVIVFEGTPXSNATAHAPQSLLNGMNKFLELLGIPF 236
+ +V GT N T + + ++ G+N L+ LG+P+
Sbjct: 92 ITTKVFFGAGTKLPNTTGLSRKHIIEGLNASLKRLGLPY 130
>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 413 EPFNYFSCYQTLFRIQVS*RFINKVNISRFTKTQHESY 526
E F Y++ L + ++ NK+ +S+FT QH Y
Sbjct: 558 EIFEYYNKPWNLLVLYSLLQYENKLTVSQFTAMQHSEY 595
>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1115
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -2
Query: 699 NPKRFXRNHRDLSGVYCMTRLEMLIYIPSSS 607
N ++ D++ YC + L++L Y+PS S
Sbjct: 495 NKTKYAGLETDITNSYCNSVLQLLSYVPSFS 525
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,451,378
Number of Sequences: 5004
Number of extensions: 43885
Number of successful extensions: 114
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -