Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1348
(700 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1553 - 27653473-27653490,27653634-27653673,27653852-276539... 78 6e-15
03_06_0097 - 31632238-31632525,31633386-31633769 56 2e-08
12_01_0152 - 1168928-1169377 41 0.001
11_01_0155 - 1287003-1287452 41 0.001
03_02_0526 + 9173003-9173063,9173190-9173255,9173349-9173446,917... 30 2.0
06_02_0092 - 11624905-11625123,11625206-11625292,11625767-116258... 29 4.7
04_03_0946 + 20975955-20976095,20976189-20976330,20976449-209765... 29 4.7
01_01_0631 - 4752606-4752706,4754039-4755578 29 4.7
07_03_1399 - 26274064-26274303,26274395-26274652,26274791-262749... 28 6.2
03_04_0201 - 18409088-18409306,18409389-18409475,18409950-184100... 28 6.2
>07_03_1553 -
27653473-27653490,27653634-27653673,27653852-27653939,
27654150-27654230,27654644-27655084,27655692-27656325
Length = 433
Score = 78.2 bits (184), Expect = 6e-15
Identities = 52/120 (43%), Positives = 68/120 (56%), Gaps = 1/120 (0%)
Frame = -2
Query: 480 DEEGRAYITTYECLRKKARGDVTIRSPGTGKITINKKDI-TYFDDVQSREQVLFPLIFTG 304
DE+GRAY T RK + V I+ PG GK +N K +YF + R +L P T
Sbjct: 286 DEKGRAYGTGK---RKCSIARVWIQ-PGDGKFIVNDKQFDSYFPILDHRADLLRPFTVTK 341
Query: 303 MQNRVDVECNVEGGGPSGQSGAIRWGIAWGLRSFVDKDMLQQMQVAGLLTRDHRRRERKK 124
R DV C V+GGG SGQ GAIR GI+ L+++ + + ++ AG LTRD R ERKK
Sbjct: 342 TLGRWDVTCTVKGGGVSGQVGAIRLGISRALQNW-EPGLRPNLKAAGYLTRDSRVVERKK 400
>03_06_0097 - 31632238-31632525,31633386-31633769
Length = 223
Score = 56.4 bits (130), Expect = 2e-08
Identities = 41/108 (37%), Positives = 56/108 (51%), Gaps = 2/108 (1%)
Frame = -2
Query: 438 RKKARGDVTIRSPGTGKITINKKDITYF--DDVQSREQVLFPLIFTGMQNRVDVECNVEG 265
RK A V ++ GTG++ IN +D + + E PL+ G +N DV V G
Sbjct: 104 RKTAIARVVLQE-GTGRVFINFRDAKEYLQGNPMWMEYCKVPLVTLGFENSYDVFVKVHG 162
Query: 264 GGPSGQSGAIRWGIAWGLRSFVDKDMLQQMQVAGLLTRDHRRRERKKA 121
GG SGQ+ AI G+A L + + ++ GLLTRD R ERKKA
Sbjct: 163 GGLSGQAQAICLGVARALVKISTANKV-TLRGEGLLTRDTRIVERKKA 209
>12_01_0152 - 1168928-1169377
Length = 149
Score = 40.7 bits (91), Expect = 0.001
Identities = 32/109 (29%), Positives = 46/109 (42%), Gaps = 5/109 (4%)
Frame = -2
Query: 453 TYECL-RKKARGDVTIRSPGTGKITINKKDITYFDDVQSREQVLFPLIFTGMQN--RVDV 283
T +C RKK V+ PG G I +N I R + P++ G +D+
Sbjct: 12 TVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRFKDIDM 71
Query: 282 ECNVEGGGPSGQSGAIRWGIAWGLRSFVDK--DMLQQMQVAGLLTRDHR 142
V GGG + Q AIR IA L ++ K D + +V + R R
Sbjct: 72 RIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDR 120
>11_01_0155 - 1287003-1287452
Length = 149
Score = 40.7 bits (91), Expect = 0.001
Identities = 32/109 (29%), Positives = 46/109 (42%), Gaps = 5/109 (4%)
Frame = -2
Query: 453 TYECL-RKKARGDVTIRSPGTGKITINKKDITYFDDVQSREQVLFPLIFTGMQN--RVDV 283
T +C RKK V+ PG G I +N I R + P++ G +D+
Sbjct: 12 TVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRFKDIDM 71
Query: 282 ECNVEGGGPSGQSGAIRWGIAWGLRSFVDK--DMLQQMQVAGLLTRDHR 142
V GGG + Q AIR IA L ++ K D + +V + R R
Sbjct: 72 RIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDR 120
>03_02_0526 +
9173003-9173063,9173190-9173255,9173349-9173446,
9173555-9173592,9173679-9173766,9173854-9174129,
9174232-9174456
Length = 283
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = -2
Query: 681 GSMWVNKDQLEQLLVEKISDLEYDNFKVVMERLVSLPYSYRYKDF 547
G V K +E+ +E + +L Y N+ M L ++ YS+ Y ++
Sbjct: 42 GDYMVEKLGIEESKIENLGNLLYKNYGTTMAGLRAIGYSFDYDEY 86
>06_02_0092 -
11624905-11625123,11625206-11625292,11625767-11625889,
11625992-11626351,11626427-11626511,11626603-11626661,
11627173-11627265,11627360-11627464,11627539-11627636,
11627811-11627916,11628009-11628131,11628986-11629021,
11629113-11629310,11629415-11629612,11629917-11630056,
11630181-11630322,11630416-11630556
Length = 770
Score = 28.7 bits (61), Expect = 4.7
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Frame = -2
Query: 684 GGSMWVNKDQLE--QLLVEKISDLEYDNFKVVMERLVSLPYSYRYKDFIEKFRKPLAVQ- 514
G WVN+D++E LL +++ + Y K + V PY ++ K + FR Q
Sbjct: 557 GSGSWVNEDEVEFITLLYHQMA-MRYPELKSSSQVAVISPYRHQVKLLKDHFRSTFGDQS 615
Query: 513 KFALEIPKPNYDEEGRAYITTYECLR 436
K +++ + + + + C+R
Sbjct: 616 KEVIDVNTVDGFQGREKEVVIFSCVR 641
>04_03_0946 +
20975955-20976095,20976189-20976330,20976449-20976588,
20976893-20977090,20977195-20977392,20977484-20977519,
20978374-20978496,20978589-20978694,20978869-20978966,
20979041-20979145,20979240-20979332,20979842-20979900,
20979984-20980068,20980144-20980503,20980606-20980728,
20981203-20981289,20981372-20981590
Length = 770
Score = 28.7 bits (61), Expect = 4.7
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Frame = -2
Query: 684 GGSMWVNKDQLE--QLLVEKISDLEYDNFKVVMERLVSLPYSYRYKDFIEKFRKPLAVQ- 514
G WVN+D++E LL +++ + Y K + V PY ++ K + FR Q
Sbjct: 557 GSGSWVNEDEVEFITLLYHQMA-MRYPELKSSSQVAVISPYRHQVKLLKDHFRSTFGDQS 615
Query: 513 KFALEIPKPNYDEEGRAYITTYECLR 436
K +++ + + + + C+R
Sbjct: 616 KEVIDVNTVDGFQGREKEVVIFSCVR 641
>01_01_0631 - 4752606-4752706,4754039-4755578
Length = 546
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = +2
Query: 188 ISLSTKLRRPQAIPHLMAPDWPEGPPPSTLHSTSTRFCI 304
IS+S +L +P L+ DWP+GP PS L +TS + I
Sbjct: 109 ISVSFELVKPPETS-LLTLDWPQGPRPS-LGTTSYPYVI 145
>07_03_1399 -
26274064-26274303,26274395-26274652,26274791-26274916,
26275012-26275109,26275200-26275265,26275350-26275395
Length = 277
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -2
Query: 669 VNKDQLEQLLVEKISDLEYDNFKVVMERLVSLPYSYRYKDF 547
+NK Q+E+ LV K+ Y F M L L Y + Y DF
Sbjct: 41 LNKLQIEESLVPKMCLDLYREFGTTMAGLKVLGYDFDYDDF 81
>03_04_0201 -
18409088-18409306,18409389-18409475,18409950-18410072,
18410175-18410534,18410610-18410694,18410780-18410838,
18411350-18411442,18411537-18411641,18411716-18411813,
18411988-18412093,18412186-18412308,18413163-18413198,
18413290-18413487,18413592-18413789,18414094-18414233,
18414356-18414497,18414591-18414731
Length = 770
Score = 28.3 bits (60), Expect = 6.2
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Frame = -2
Query: 684 GGSMWVNKDQLE--QLLVEKISDLEYDNFKVVMERLVSLPYSYRYKDFIEKFRKPLAVQ- 514
G WVN+D++E LL +++ + Y K + V PY ++ K + FR Q
Sbjct: 557 GSGSWVNEDEVEFITLLYHQMA-MRYPELKSSSQVAVISPYRHQVKLLKDHFRSTFGDQS 615
Query: 513 KFALEIPKPNYDEEGRAYITTYECLR 436
K +++ + + + + C+R
Sbjct: 616 KEVIDVNTVDGFQGCEKEVVIFSCVR 641
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,424,050
Number of Sequences: 37544
Number of extensions: 394556
Number of successful extensions: 1163
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1159
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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