Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1348
(700 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L11247-4|AAK84520.1| 392|Caenorhabditis elegans Hypothetical pr... 70 1e-12
Z78413-6|CAB01658.1| 144|Caenorhabditis elegans Hypothetical pr... 41 0.001
U80953-3|AAB52554.1| 350|Caenorhabditis elegans Abnormal dauer ... 31 0.60
U72884-1|AAC47389.1| 350|Caenorhabditis elegans DAF-7 protein. 31 0.60
U72883-1|AAC47390.1| 350|Caenorhabditis elegans dauer larva dev... 31 0.60
U23529-10|AAK39162.2| 307|Caenorhabditis elegans Hypothetical p... 29 2.4
Z70781-2|CAA94832.1| 396|Caenorhabditis elegans Hypothetical pr... 27 9.8
>L11247-4|AAK84520.1| 392|Caenorhabditis elegans Hypothetical
protein F09G8.3 protein.
Length = 392
Score = 70.1 bits (164), Expect = 1e-12
Identities = 62/211 (29%), Positives = 95/211 (45%), Gaps = 23/211 (10%)
Frame = -2
Query: 687 LGGSMWVNKDQLEQLLVEKISDLEYDNFKVVMERLVSLPYSYRYKDFIEKFRKPLAV--- 517
L GS WV D+L++ L EK S Y + E L SLP S + F+ +FR+P+
Sbjct: 170 LSGSQWVTADKLKKKLSEKFSKELYGQVIIAFEHLASLPGSAIEQKFLMEFREPMTASTG 229
Query: 516 -QKFALEIPKPNY-DEEGRAYI-TTYECLRKKARGDVTIRSPGTGKITINKKDITYFDDV 346
+ F IP+ + R Y T C K R V + G GK I+ + F +
Sbjct: 230 SKLFGPAIPEVHVCAVTNRRYAEVTTRC--KDTRATVKVTDAGKGKFDIDGLQLHDFRHL 287
Query: 345 QSREQVLFPLIFTGMQNRVDVECN-----------------VEGGGPSGQSGAIRWGIAW 217
Q+RE +L P+I + R DV + GG S A+R G A
Sbjct: 288 QAREILLAPMIVSQSLGRFDVTATTSCISNTLPEAPNKAPLMRSGGMSALPRAVRHGTAL 347
Query: 216 GLRSFVDKDMLQQMQVAGLLTRDHRRRERKK 124
+ + + + ++ ++++GLLT D R+ ER K
Sbjct: 348 CVAA-LQPEAIEPLRLSGLLTLDPRKNERSK 377
>Z78413-6|CAB01658.1| 144|Caenorhabditis elegans Hypothetical
protein T01C3.6 protein.
Length = 144
Score = 40.7 bits (91), Expect = 0.001
Identities = 34/117 (29%), Positives = 52/117 (44%), Gaps = 12/117 (10%)
Frame = -2
Query: 438 RKKARGDVTIRSPGTGKITINKKDITYFDDVQSREQVLFPLIFTGMQ--NRVDVECNVEG 265
RKK V G G I +N + + + + R ++ PL+ G + VD+ V G
Sbjct: 13 RKKTATAVAHCKKGQGLIKVNGRPLEFLEPQILRIKLQEPLLLVGKERFQDVDIRIRVSG 72
Query: 264 GGPSGQSGAIRWGIAWGL----RSFVDKDMLQQMQ------VAGLLTRDHRRRERKK 124
GG Q A+R +A L +VD+ ++++ LL D RRRE KK
Sbjct: 73 GGHVAQIYAVRQALAKALVAYYHKYVDEQSKRELKNIFAAYDKSLLVADPRRRESKK 129
>U80953-3|AAB52554.1| 350|Caenorhabditis elegans Abnormal dauer
formation protein 7 protein.
Length = 350
Score = 31.5 bits (68), Expect = 0.60
Identities = 19/76 (25%), Positives = 32/76 (42%)
Frame = -2
Query: 570 YSYRYKDFIEKFRKPLAVQKFALEIPKPNYDEEGRAYITTYECLRKKARGDVTIRSPGTG 391
Y Y+D +EK + + V+ P+Y E + ++ R D+ +++ T
Sbjct: 70 YLEMYRDLLEKDEQDMGVEMSFYTAKDPSYGENPSQLVAKFDVTNDLERSDI-LQATLTV 128
Query: 390 KITINKKDITYFDDVQ 343
I I KD DVQ
Sbjct: 129 SIEIPAKDSGMLQDVQ 144
>U72884-1|AAC47389.1| 350|Caenorhabditis elegans DAF-7 protein.
Length = 350
Score = 31.5 bits (68), Expect = 0.60
Identities = 19/76 (25%), Positives = 32/76 (42%)
Frame = -2
Query: 570 YSYRYKDFIEKFRKPLAVQKFALEIPKPNYDEEGRAYITTYECLRKKARGDVTIRSPGTG 391
Y Y+D +EK + + V+ P+Y E + ++ R D+ +++ T
Sbjct: 70 YLEMYRDLLEKDEQDMGVEMSFYTAKDPSYGENPSQLVAKFDVTNDLERSDI-LQATLTV 128
Query: 390 KITINKKDITYFDDVQ 343
I I KD DVQ
Sbjct: 129 SIEIPAKDSGMLQDVQ 144
>U72883-1|AAC47390.1| 350|Caenorhabditis elegans dauer larva
development regulatorygrowth factor protein.
Length = 350
Score = 31.5 bits (68), Expect = 0.60
Identities = 19/76 (25%), Positives = 32/76 (42%)
Frame = -2
Query: 570 YSYRYKDFIEKFRKPLAVQKFALEIPKPNYDEEGRAYITTYECLRKKARGDVTIRSPGTG 391
Y Y+D +EK + + V+ P+Y E + ++ R D+ +++ T
Sbjct: 70 YLEMYRDLLEKDEQDMGVEMSFYTAKDPSYGENPSQLVAKFDVTNDLERSDI-LQATLTV 128
Query: 390 KITINKKDITYFDDVQ 343
I I KD DVQ
Sbjct: 129 SIEIPAKDSGMLQDVQ 144
>U23529-10|AAK39162.2| 307|Caenorhabditis elegans Hypothetical
protein C15B12.6 protein.
Length = 307
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = -2
Query: 693 LQLGGSMWVNKDQLEQLLVEKI-SDLEYDNFKVVMERLVSLPYSYRYKDFIEKFR 532
L L G W D L VE I D+ D+ +V + ++LP + R K+F ++ R
Sbjct: 12 LDLDGDDWEEVDVLSDKCVEDILEDVHIDDPILVSDVRITLPANIRIKNFKKEIR 66
>Z70781-2|CAA94832.1| 396|Caenorhabditis elegans Hypothetical
protein F57A8.4 protein.
Length = 396
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = -2
Query: 228 GIAWGLRSFVDKDMLQQMQVAGLLTRDHRRRERKKAWSTWS 106
GI W + +F+D + +M + + RRR+ + ++TW+
Sbjct: 237 GIGWAVTTFIDMPKVSEMIRKESINSNKRRRDELR-YATWT 276
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,035,789
Number of Sequences: 27780
Number of extensions: 353784
Number of successful extensions: 973
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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