Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1347
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown 7|Schizos...    27   2.0  
SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces pomb...    27   3.4  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    26   6.0  
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch...    25   7.9  

>SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown
           7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 581

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -3

Query: 587 SYYSCCPVKRFTCVIQLALWNSVTSYSAI-IWLA 489
           +Y+  CP++  TC I    W  + S + I I+LA
Sbjct: 165 NYFVTCPLELTTCAITFKFWTEINSAAWISIFLA 198


>SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 401

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 588 SEQDSIENLDGLPLLVIQGDNLSSTSLSXLGE 683
           SE DS++NL G   ++ +  N S T++  L E
Sbjct: 342 SEVDSLQNLSGKVCVICRSGNTSQTAVRKLQE 373


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = -2

Query: 615 RDFRSSLAQILLFVLSSK 562
           RDFR+ LA ++LF +SSK
Sbjct: 866 RDFRAQLALLVLFWISSK 883


>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 354 SRXG*LSYIVLPNYEKSIPKE 416
           +R   L Y ++P  E+S+PKE
Sbjct: 429 ARASELQYAIIPELERSVPKE 449


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,374,522
Number of Sequences: 5004
Number of extensions: 42687
Number of successful extensions: 93
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)