Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1347
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016450-9|AAB65987.3|  295|Caenorhabditis elegans Serpentine re...    31   1.0  
U28971-2|AAA68377.1|  180|Caenorhabditis elegans Hypothetical pr...    29   3.2  
U80028-1|AAN73865.1|  369|Caenorhabditis elegans Serpentine rece...    28   5.6  

>AF016450-9|AAB65987.3|  295|Caenorhabditis elegans Serpentine
           receptor, class t protein69 protein.
          Length = 295

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 89  IQSSNRNNNILKN*CDIYHAYINGLSLFLFQRSFR 193
           I  SN+ N  + N   I H Y+N   L +F RS R
Sbjct: 233 IDMSNKRNQAILNGLWIIHCYVNPTMLLIFNRSIR 267


>U28971-2|AAA68377.1|  180|Caenorhabditis elegans Hypothetical
           protein B0244.9 protein.
          Length = 180

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 557 FTCVIQLALWNSVTSYSAIIWLAF 486
           F  ++ L+LW + T YS  IWL F
Sbjct: 59  FLVILTLSLWIASTHYSYFIWLVF 82


>U80028-1|AAN73865.1|  369|Caenorhabditis elegans Serpentine
           receptor, class w protein138 protein.
          Length = 369

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
 Frame = -3

Query: 593 LRSYYSCCPVKRFTCVIQLALWNSVTSYS--AIIWLAF 486
           LR YY C   + +T VI   L+  V  YS     WL F
Sbjct: 95  LRDYYDCFQAETYTFVIVETLFQVVQDYSRRCSTWLCF 132


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,602,691
Number of Sequences: 27780
Number of extensions: 222911
Number of successful extensions: 402
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)