Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1346
         (640 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate dehydrogenase|Sch...    28   0.99 
SPAC15A10.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   5.3  

>SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate
           dehydrogenase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 28.3 bits (60), Expect = 0.99
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = -2

Query: 627 EIASVVKRKDKFGGLHFFNPVPVMRLLEVVKGSETSEATYKTMMEWGKSVGKT 469
           E++ V     +F GLHF     V R L    G   +   Y+T   + K VG+T
Sbjct: 250 EVSKVCFNHPEFAGLHFTGSTAVFRSLWGTIGENVANGKYRT---YPKIVGET 299


>SPAC15A10.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 190

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 416 GTNSLFTTKPGVSLQVIQVLPTDFPHSIIVLYVASDVSLPL 538
           GT+ +FT K  V      +LP + P  I +  +  +VSLPL
Sbjct: 75  GTSQIFTFKKNVL-----ILPANVPEGIELRILEENVSLPL 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,513,782
Number of Sequences: 5004
Number of extensions: 51764
Number of successful extensions: 112
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)