Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1346
(640 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1005 + 33723743-33723946,33724035-33724256,33724789-337249... 145 2e-35
01_03_0216 + 13870364-13870472,13871406-13871477,13871603-138716... 81 1e-15
05_01_0400 - 3159370-3159385,3159599-3159703,3159972-3160006,316... 76 3e-14
02_02_0418 + 10000744-10000840,10000952-10001023,10001786-100018... 71 1e-12
05_04_0012 + 17145112-17145205,17145681-17145752,17145832-171459... 69 2e-12
04_04_0276 + 24091360-24091464,24091580-24091713,24091813-240924... 29 3.1
01_03_0179 + 13500413-13500768,13502522-13502642,13502876-135029... 29 4.1
02_01_0253 + 1664217-1664378,1664739-1664999,1665116-1665622,166... 27 9.5
>01_06_1005 +
33723743-33723946,33724035-33724256,33724789-33724901,
33725581-33725950
Length = 302
Score = 145 bits (352), Expect = 2e-35
Identities = 69/159 (43%), Positives = 101/159 (63%)
Frame = -2
Query: 639 LSINEIASVVKRKDKFGGLHFFNPVPVMRLLEVVKGSETSEATYKTMMEWGKSVGKTCIT 460
+SI +AS R + G+HFFNP P+M+L+E+++G++TSE + + + + +GKT I
Sbjct: 128 ISITRLASATNRPCQVIGMHFFNPPPIMKLIEIIRGADTSEEVFTKVKSFSERLGKTVIC 187
Query: 459 CKDTPGFVVNRLLVPYICEAIRLYERGDASARDIDIAMKLGAGYPMGPLELADYVGLDTN 280
+D PGF+VNR+L+P I EA G A+ DID MKLG +PMGPL+LAD++GLD
Sbjct: 188 SQDYPGFIVNRILMPMINEAFWALYTGVATKEDIDTGMKLGTNHPMGPLQLADFIGLDVC 247
Query: 279 KFILDGWHKKFPDQQLFKPIPLLEKLVAEGKLGVKTGEG 163
+L H D + + P PLL + V G+LG K G+G
Sbjct: 248 LSVLRVLHNGLGDSK-YSPCPLLVQYVDAGRLGKKRGQG 285
>01_03_0216 +
13870364-13870472,13871406-13871477,13871603-13871668,
13871767-13871823,13871917-13871984,13872068-13872149,
13872445-13872500,13872645-13872947,13873042-13873128,
13873199-13873373,13873481-13873602,13873689-13873852,
13873925-13874179,13874312-13874433,13874542-13874663,
13875111-13875259,13875346-13875484,13875715-13875750
Length = 727
Score = 80.6 bits (190), Expect = 1e-15
Identities = 51/160 (31%), Positives = 80/160 (50%)
Frame = -2
Query: 639 LSINEIASVVKRKDKFGGLHFFNPVPVMRLLEVVKGSETSEATYKTMMEWGKSVGKTCIT 460
+ +N I + KD+ G HFF+P VM LLE+V+ TS +++ GK + KT I
Sbjct: 432 IDLNLIGEKTRSKDRIVGAHFFSPAHVMPLLEIVRTQHTSPQVVVDLLDVGKKIKKTPIV 491
Query: 459 CKDTPGFVVNRLLVPYICEAIRLYERGDASARDIDIAMKLGAGYPMGPLELADYVGLDTN 280
+ GF VNR+ PY A+ + G ID A G PMGP LAD VG
Sbjct: 492 VGNCTGFAVNRMFFPYTQSALLFVDLG-MDVYKIDRAC-TKFGMPMGPFRLADLVGFGVA 549
Query: 279 KFILDGWHKKFPDQQLFKPIPLLEKLVAEGKLGVKTGEGF 160
+ + FP ++++K + L+ ++ + + G + +GF
Sbjct: 550 AATGMQYLENFP-ERVYKSM-LIPLMMEDKRTGEASRKGF 587
Score = 42.3 bits (95), Expect = 3e-04
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
Frame = -2
Query: 438 VVNRLLVPYICEAIRLYERGDA-SARDIDIAMKLGAGYPM---GPLELADYVGLDTNKFI 271
+V + P I EA R+ + G A A D+DIA G G+P G + AD +G
Sbjct: 629 IVEMVFFPVINEACRVLDEGIAVKASDLDIASIFGMGFPPYRGGIMFWADSIGAKYIHDK 688
Query: 270 LDGWHKKFPDQQLFKPIPLLEKLVAEG 190
L+ W K++ D +FKP L + A G
Sbjct: 689 LEVWAKRYSD--IFKPCSYLAERAANG 713
>05_01_0400 -
3159370-3159385,3159599-3159703,3159972-3160006,
3160134-3160272,3160457-3160605,3161052-3161173,
3161296-3161417,3161779-3162033,3162108-3162271,
3162311-3162489,3162593-3162767,3162916-3163002,
3163144-3163446,3163539-3163594,3163813-3163894,
3163972-3164039,3164779-3164835,3164926-3164991,
3165121-3165192,3167363-3167459
Length = 782
Score = 75.8 bits (178), Expect = 3e-14
Identities = 39/116 (33%), Positives = 60/116 (51%)
Frame = -2
Query: 639 LSINEIASVVKRKDKFGGLHFFNPVPVMRLLEVVKGSETSEATYKTMMEWGKSVGKTCIT 460
+ ++ I +D+ G HFF+P VM LLE+V+ + TS +++ GK + KT +
Sbjct: 447 IDLDLIGEKTNSQDRIAGAHFFSPAHVMPLLEIVRSNHTSPQVVVDLLDVGKKIKKTPVV 506
Query: 459 CKDTPGFVVNRLLVPYICEAIRLYERGDASARDIDIAMKLGAGYPMGPLELADYVG 292
+ GF VNR+ PY A+ L +RG + + + G PMGP L D VG
Sbjct: 507 VGNCTGFAVNRMFSPYTSIALLLVDRGMDVYKIDQVCTEF--GMPMGPFRLLDLVG 560
Score = 39.9 bits (89), Expect = 0.002
Identities = 30/87 (34%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Frame = -2
Query: 438 VVNRLLVPYICEAIRLYERGDAS-ARDIDIAMKLGAGYPM---GPLELADYVGLDTNKFI 271
+V + P I EA ++ G A+ A D+DIA G G+P G + AD +G
Sbjct: 644 IVEMVFFPVINEACQVLSEGIANKASDLDIASIFGMGFPPYRGGIVYWADSIGAKRIHAR 703
Query: 270 LDGWHKKFPDQQLFKPIPLLEKLVAEG 190
L W K QLF+P L + AEG
Sbjct: 704 LSEWEMK--HGQLFRPCSYLSERAAEG 728
>02_02_0418 +
10000744-10000840,10000952-10001023,10001786-10001848,
10001952-10002008,10002159-10002226,10002327-10002408,
10002517-10002572,10002934-10003236,10003638-10003724,
10004454-10004628,10004813-10004934,10005171-10005334,
10006201-10006455,10006979-10007100,10007220-10007341,
10007452-10007600,10007649-10007652
Length = 665
Score = 70.5 bits (165), Expect = 1e-12
Identities = 46/160 (28%), Positives = 73/160 (45%)
Frame = -2
Query: 639 LSINEIASVVKRKDKFGGLHFFNPVPVMRLLEVVKGSETSEATYKTMMEWGKSVGKTCIT 460
+ +N + +D+ G HFF+P +M LLE+V+ +TS ++ GK + K +
Sbjct: 427 IDLNVVGEKTNSQDRIIGAHFFSPAHIMPLLEIVRTEKTSPQAILDLITVGKMIKKVPVV 486
Query: 459 CKDTPGFVVNRLLVPYICEAIRLYERGDASARDIDIAMKLGAGYPMGPLELADYVGLDTN 280
+ GF VNR PY + L G R ID + G PMGP +L D G
Sbjct: 487 VGNCTGFAVNRTFFPYTQGSHLLVSIGIDVFR-IDRVIS-SFGMPMGPFQLQDLAGYGVA 544
Query: 279 KFILDGWHKKFPDQQLFKPIPLLEKLVAEGKLGVKTGEGF 160
+ D + F + L L++ +V G+ G G+G+
Sbjct: 545 LAVKDIYAAAFGTRNL--DSNLVDLMVQNGRQGKSNGKGY 582
>05_04_0012 +
17145112-17145205,17145681-17145752,17145832-17145911,
17146059-17146175,17146282-17146363,17147086-17147141,
17147258-17147560,17147658-17147744,17148118-17148292,
17148370-17148491,17149028-17149191,17149277-17149531,
17150419-17150540,17150656-17150777,17151302-17151450,
17151565-17151703,17151831-17151866
Length = 724
Score = 69.3 bits (162), Expect = 2e-12
Identities = 45/160 (28%), Positives = 76/160 (47%)
Frame = -2
Query: 639 LSINEIASVVKRKDKFGGLHFFNPVPVMRLLEVVKGSETSEATYKTMMEWGKSVGKTCIT 460
+ ++ I +D+ G HFF+P M LLE+++ TS ++ K + KT I
Sbjct: 429 IDLHLIGQKTSCQDRIAGAHFFSPAHAMPLLEIIRTHRTSSQVVIDLLNVAKQIRKTPIV 488
Query: 459 CKDTPGFVVNRLLVPYICEAIRLYERGDASARDIDIAMKLGAGYPMGPLELADYVGLDTN 280
+ GF VNR+ P+ A L + G ID + G PMGP LAD VG
Sbjct: 489 VGNCTGFAVNRMFFPFTQVAYFLVDYG-LDVYHIDHVI-TKFGMPMGPFRLADLVGFGVA 546
Query: 279 KFILDGWHKKFPDQQLFKPIPLLEKLVAEGKLGVKTGEGF 160
+ + +P ++ +K + L++ ++ E + G + +GF
Sbjct: 547 IASRKQYLQSYP-ERCYKSM-LIQIMLEENRTGESSRKGF 584
Score = 35.1 bits (77), Expect = 0.047
Identities = 29/93 (31%), Positives = 41/93 (44%), Gaps = 4/93 (4%)
Frame = -2
Query: 456 KDTPGFVVNRLLVPYICEAIRLYERGDA-SARDIDIAMKLGAGYPM---GPLELADYVGL 289
K T +V +L P + EA RL + G A A D+D+A +G G+P G + AD G
Sbjct: 620 KLTDDEIVEMMLFPVVNEACRLLDEGVAMKASDLDVASIMGRGFPSYRGGVMFWADSFGA 679
Query: 288 DTNKFILDGWHKKFPDQQLFKPIPLLEKLVAEG 190
L W K +F+P L +G
Sbjct: 680 KYIYDRLKDWSKYHGG--IFEPYEYLSTRARQG 710
>04_04_0276 +
24091360-24091464,24091580-24091713,24091813-24092454,
24092858-24093044
Length = 355
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 492 WGKSVGKTCITCKDTPGFVVNRLLVPYICEAIRLYER 382
W K + +T + TP V+ L + +C+A RLY R
Sbjct: 107 WLKRAAEASVTARLTPEHAVDMLKLARLCDAPRLYLR 143
>01_03_0179 +
13500413-13500768,13502522-13502642,13502876-13502998,
13504409-13504497,13504612-13504696,13504852-13505011,
13505096-13505160,13505296-13505349,13505437-13505527,
13505685-13505986,13506084-13506365,13506451-13506764,
13506920-13507080,13507202-13507305,13507379-13507535,
13507652-13507896,13507995-13508327,13508428-13508751,
13508816-13508899,13509001-13509169,13509610-13509731,
13510538-13510792,13511115-13511252
Length = 1377
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 333 GYPMGPLELADYVGLDTNKFILDGWHKKFPDQ 238
GY + PL A + TN+F+ W+K FP Q
Sbjct: 744 GYWISPLSYAQNA-ISTNEFLGRSWNKSFPGQ 774
>02_01_0253 +
1664217-1664378,1664739-1664999,1665116-1665622,
1665746-1665802
Length = 328
Score = 27.5 bits (58), Expect = 9.5
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +1
Query: 442 TRGVLASDTGLADRLSPL--HHSFVCSFRCLTAFDDL*QTHHWDRIE 576
T +L++ +G A RL P+ CSF +T + ++ +WDR E
Sbjct: 200 TNYILSTGSGEARRLGPVPDQQRRTCSFSAVTVGKTVGESVYWDRRE 246
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,820,187
Number of Sequences: 37544
Number of extensions: 334716
Number of successful extensions: 791
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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