Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1248
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026209-4|AAW88411.1|  317|Caenorhabditis elegans Serpentine re...    34   0.12 
Z75549-7|CAD60423.1|  306|Caenorhabditis elegans Hypothetical pr...    28   8.1  
U28737-8|ABA61869.1|  537|Caenorhabditis elegans Hypothetical pr...    28   8.1  
U28737-7|ABA61870.1|  501|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>AF026209-4|AAW88411.1|  317|Caenorhabditis elegans Serpentine
           receptor, class h protein2, isoform b protein.
          Length = 317

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = -2

Query: 275 PPCFICLLLYILRFEISNIIIFMYKMRNARAHTAKT 168
           P CF+ L++ ++   ++ I IF+Y+M  A  HTA T
Sbjct: 90  PECFLILVVILIYNGLACIFIFLYRMEVASKHTAPT 125


>Z75549-7|CAD60423.1|  306|Caenorhabditis elegans Hypothetical
           protein T19C4.8 protein.
          Length = 306

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -1

Query: 333 SKEKLTDVLVFLTCVCVRCTXVFYMF-IIIYFEIRNFEY 220
           SK  + D+   L+C  V CT V  +   I Y +IR F +
Sbjct: 167 SKYNIKDIFTTLSCFMVSCTVVTMISNFISYLKIRTFPF 205


>U28737-8|ABA61869.1|  537|Caenorhabditis elegans Hypothetical
           protein F14B8.5a protein.
          Length = 537

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 473 CNFGVSNGIL*CAYSFMRVLPCACSTQQY 559
           CNF  SN    C +SF+ V+ CA  + QY
Sbjct: 173 CNFVPSNHQNQCQFSFVLVISCADQSIQY 201


>U28737-7|ABA61870.1|  501|Caenorhabditis elegans Hypothetical
           protein F14B8.5b protein.
          Length = 501

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 473 CNFGVSNGIL*CAYSFMRVLPCACSTQQY 559
           CNF  SN    C +SF+ V+ CA  + QY
Sbjct: 137 CNFVPSNHQNQCQFSFVLVISCADQSIQY 165


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,254,146
Number of Sequences: 27780
Number of extensions: 166113
Number of successful extensions: 485
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)