Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1248
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    25   0.76 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   1.0  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    24   1.3  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   2.3  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   2.3  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   7.1  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    21   9.3  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    21   9.3  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 25.0 bits (52), Expect = 0.76
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 266 FICLLLYILRFEISNIIIFMYKMRNARAH 180
           F C++  +    +S I+I  Y  RNA  H
Sbjct: 298 FNCIMFMVASSVVSTILILNYHHRNADTH 326


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = +1

Query: 64   IYETVNDDERDTSERSRKNARTRXSVTFGRTRRFDVFAVCA 186
            +Y   ++ E  TS++   N  T  +    +TRR+D +   +
Sbjct: 1215 VYTKADNAEEPTSQKVPPNQLTHEASELDKTRRYDFWVTAS 1255


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = +2

Query: 551 QQY*IYNVSSQIQYRRDKRAREREKSGKR*KLRTIECIACVXXYK*INKXFTYH 712
           ++Y  Y  +S+ ++R D+R RER K  K     + + I     YK  NK   Y+
Sbjct: 287 REYRKYRETSKERFR-DRRERERSKESKIISSLSNKTIHNNNNYKNYNKKLYYN 339


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -1

Query: 315 DVLVFLTCVCVRCTXVFYMFIIIYF 241
           D  VF+TC+ +    +  +FII+++
Sbjct: 216 DTKVFVTCIFIWAYVIPLIFIILFY 240


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -1

Query: 315 DVLVFLTCVCVRCTXVFYMFIIIYF 241
           D  VF+TC+ +    +  +FII+++
Sbjct: 216 DTKVFVTCIFIWAYVIPLIFIILFY 240


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 333 SKEKLTDVLVFLTCVCVRCTXVFY 262
           SK+K  DVL+ +  +    + VFY
Sbjct: 314 SKDKPEDVLIIIYTILTYMSGVFY 337


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +2

Query: 596 RDKRAREREKSGK 634
           RDKR RER K  K
Sbjct: 68  RDKRERERSKERK 80


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +2

Query: 596 RDKRAREREKSGK 634
           RDKR RER K  K
Sbjct: 68  RDKRERERSKERK 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,412
Number of Sequences: 438
Number of extensions: 2482
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)