Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1247
(750 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 188 3e-48
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 188 3e-48
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 188 3e-48
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 66 2e-11
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 46 2e-05
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 46 2e-05
Z78064-8|CAO82042.1| 357|Caenorhabditis elegans Hypothetical pr... 29 3.5
AL033514-38|CAA22111.2| 341|Caenorhabditis elegans Hypothetical... 29 3.5
U41007-15|AAQ01538.1| 564|Caenorhabditis elegans Kinesin-like p... 28 6.2
U41007-14|AAA82277.1| 690|Caenorhabditis elegans Kinesin-like p... 28 6.2
AB023577-1|BAB82459.1| 690|Caenorhabditis elegans Kinesin like ... 28 6.2
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 188 bits (459), Expect = 3e-48
Identities = 94/142 (66%), Positives = 106/142 (74%)
Frame = -1
Query: 741 EAVPGAQCRFQRKERVRPRNCVVVMLLVTPKTTPPKGAADFTAQVIVLNHPGQISNGYTP 562
EAVPG F K V ++ + K P K A F AQVI++NHPGQISNGYTP
Sbjct: 267 EAVPGDNVGFNVKN-VSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTP 325
Query: 561 VLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFP 382
VLDCHTAHIACKF E+KEKVDRRTGK E PK +KSGDA IV L+P+KPLCVESF ++
Sbjct: 326 VLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYA 385
Query: 381 PLGRFAVRDMRQTVAVGVIKAV 316
PLGRFAVRDMRQTVAVGVIK+V
Sbjct: 386 PLGRFAVRDMRQTVAVGVIKSV 407
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 188 bits (459), Expect = 3e-48
Identities = 94/142 (66%), Positives = 106/142 (74%)
Frame = -1
Query: 741 EAVPGAQCRFQRKERVRPRNCVVVMLLVTPKTTPPKGAADFTAQVIVLNHPGQISNGYTP 562
EAVPG F K V ++ + K P K A F AQVI++NHPGQISNGYTP
Sbjct: 301 EAVPGDNVGFNVKN-VSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTP 359
Query: 561 VLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFP 382
VLDCHTAHIACKF E+KEKVDRRTGK E PK +KSGDA IV L+P+KPLCVESF ++
Sbjct: 360 VLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYA 419
Query: 381 PLGRFAVRDMRQTVAVGVIKAV 316
PLGRFAVRDMRQTVAVGVIK+V
Sbjct: 420 PLGRFAVRDMRQTVAVGVIKSV 441
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 188 bits (459), Expect = 3e-48
Identities = 94/142 (66%), Positives = 106/142 (74%)
Frame = -1
Query: 741 EAVPGAQCRFQRKERVRPRNCVVVMLLVTPKTTPPKGAADFTAQVIVLNHPGQISNGYTP 562
EAVPG F K V ++ + K P K A F AQVI++NHPGQISNGYTP
Sbjct: 301 EAVPGDNVGFNVKN-VSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTP 359
Query: 561 VLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFP 382
VLDCHTAHIACKF E+KEKVDRRTGK E PK +KSGDA IV L+P+KPLCVESF ++
Sbjct: 360 VLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYA 419
Query: 381 PLGRFAVRDMRQTVAVGVIKAV 316
PLGRFAVRDMRQTVAVGVIK+V
Sbjct: 420 PLGRFAVRDMRQTVAVGVIKSV 441
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 66.5 bits (155), Expect = 2e-11
Identities = 38/118 (32%), Positives = 65/118 (55%), Gaps = 1/118 (0%)
Frame = -1
Query: 666 LLVTPKTTPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTG 487
++ +P + G F A+V+VL H I++GY+ VL +A + +D++TG
Sbjct: 417 IICSPDSLAKTGRV-FDAEVLVLEHRSIIASGYSCVLHIQSAVEEVTVKGVIATIDKKTG 475
Query: 486 KSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVG-VIKAV 316
+ K +K + I+ L +P +E F+E+P LGRF +RD +T+A+G V+K V
Sbjct: 476 EKKRA--KFVKQDEKCIMRLESPEPFVLEPFKEYPYLGRFTLRDEGKTIAIGKVLKVV 531
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 46.4 bits (105), Expect = 2e-05
Identities = 27/119 (22%), Positives = 52/119 (43%)
Frame = -1
Query: 672 VMLLVTPKTTPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRR 493
V++ P T P + F +++ I G L H+ + C F + +++
Sbjct: 472 VVVRAGPDTLIP--SKKFEVRLVAFEIAMPIIKGAKAELYAHSLCVPCTFTNLLYTINKS 529
Query: 492 TGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 316
G+ + P+ I G +A+V + + +E+F LGR R T+A G+++ V
Sbjct: 530 NGEILKKGPRFIAKGASAVVEIETEYDIAIETFTSCRALGRVTFRAGGNTIAAGIVEKV 588
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 46.4 bits (105), Expect = 2e-05
Identities = 27/119 (22%), Positives = 52/119 (43%)
Frame = -1
Query: 672 VMLLVTPKTTPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRR 493
V++ P T P + F +++ I G L H+ + C F + +++
Sbjct: 490 VVVRAGPDTLIP--SKKFEVRLVAFEIAMPIIKGAKAELYAHSLCVPCTFTNLLYTINKS 547
Query: 492 TGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 316
G+ + P+ I G +A+V + + +E+F LGR R T+A G+++ V
Sbjct: 548 NGEILKKGPRFIAKGASAVVEIETEYDIAIETFTSCRALGRVTFRAGGNTIAAGIVEKV 606
>Z78064-8|CAO82042.1| 357|Caenorhabditis elegans Hypothetical
protein F57B1.9a protein.
Length = 357
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +2
Query: 200 MKYRSCMKNCAVNSSSYFLPLXAFSAALVTLPPPASLKLTALMTPTATVCLM 355
M Y +C ++N Y L ++A+V LPPP ++ + ++ A C++
Sbjct: 188 MMYNNCRYRYSLNVLHY--ELYCQTSAVVNLPPPKAISIMEIVIQFAIPCII 237
>AL033514-38|CAA22111.2| 341|Caenorhabditis elegans Hypothetical
protein Y75B8A.33 protein.
Length = 341
Score = 29.1 bits (62), Expect = 3.5
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = -3
Query: 175 KRATNSFLFYIFYKACNVTLFYNLYKVIHNISETFC 68
KR NS++F I+ C + F Y++ + +C
Sbjct: 262 KRDVNSYVFVIWGVVCQILFFLTTYRIAELVVRIYC 297
>U41007-15|AAQ01538.1| 564|Caenorhabditis elegans Kinesin-like
protein protein 10,isoform b protein.
Length = 564
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1
Query: 558 LDCHTAHIACKFAEIKEKVDRRTGKSTE 475
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>U41007-14|AAA82277.1| 690|Caenorhabditis elegans Kinesin-like
protein protein 10,isoform a protein.
Length = 690
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1
Query: 558 LDCHTAHIACKFAEIKEKVDRRTGKSTE 475
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>AB023577-1|BAB82459.1| 690|Caenorhabditis elegans Kinesin like
protein protein.
Length = 690
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1
Query: 558 LDCHTAHIACKFAEIKEKVDRRTGKSTE 475
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,734,803
Number of Sequences: 27780
Number of extensions: 352627
Number of successful extensions: 968
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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